Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales
AuthorsSefrji, Fatmah O.
Seferji, Kholoud A.
KAUST DepartmentBiological and Environmental Science and Engineering (BESE) Division
Extreme Systems Microbiology Lab
Red Sea Research Center (RSRC)
KAUST Grant NumberREI/1/4483-01-01
Permanent link to this recordhttp://hdl.handle.net/10754/669437
MetadataShow full item record
AbstractWe isolated a novel strain, R1DC25T, described as Kaustia mangrovi gen. nov. sp. nov. from the sediments of a mangrove forest on the coast of the Red Sea in Saudi Arabia. This isolate is a moderately halophilic, aerobic/facultatively anaerobic Gram-stain-negative bacterium showing optimum growth at between 30 and 40 °C, at a pH of 8.5 and with 3–5 % NaCl. The genome of R1DC25T comprises a circular chromosome that is 4 630 536 bp in length, with a DNA G+C content of 67.3 mol%. Phylogenetic analyses based on the 16S rRNA gene sequence and whole-genome multilocus sequence analysis of 120 concatenated single-copy genes revealed that R1DC25T represents a distinct lineage within the family Parvibaculaceae in the order Rhizobiales within the class Alphaproteobacteria. R1DC25T showing 95.8, 95.3 and 94.5 % 16S rRNA gene sequence identity with Rhodoligotrophos appendicifer, Rhodoligotrophos jinshengii and Rhodoligotrophos defluvii, respectively. The predominant quinone was Q-10, and the polar lipids were phosphatidylglycerol, phosphatidylcholine, diphosphatidylglycerol, as well as several distinct aminolipids and lipids. The predominant cellular fatty acids were C19 : 0 cyclo ω8c, a combination of C18 : 1ω7c and/or C18 : 1ω6c and C16 : 0. On the basis of the differences in the phenotypic, physiological and biochemical characteristics from its known relatives and the results of our phylogenetic analyses, R1DC25T (=KCTC 72348T;=JCM 33619T;=NCCB 100699T) is proposed to represent a novel species in a novel genus, and we propose the name Kaustia mangrovi gen. nov., sp. nov. (Kaustia, subjective name derived from the abbreviation KAUST for King Abdullah University of Science and Technology; mangrovi, of a mangrove).
CitationSefrji, F. O., Marasco, R., Michoud, G., Seferji, K. A., Merlino, G., & Daffonchio, D. (2021). Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales. International Journal of Systematic and Evolutionary Microbiology, 71(5). doi:10.1099/ijsem.0.004806
SponsorsThis research was funded by King Abdullah University of Science and Technology (KAUST) as part of the Circular Carbon Economy initiative (grant number, REI/1/4483-01-01) and the Competitive Research Grant ‘Microlanding, The role of the bacterial symbiome at the gill-water (air) interface in the evolution toward terrestrialization’ (grant number, CRG-7–3739)”.
Except where otherwise noted, this item's license is described as This is an open-access article distributed under the terms of the Creative Commons Attribution License.
- Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.
- Authors: Sefrji FO, Michoud G, Marasco R, Merlino G, Daffonchio D
- Issue date: 2021 Jul
- Segnochrobactrum spirostomi gen. nov., sp. nov., isolated from the ciliate Spirostomum yagiui and description of a novel family, Segnochrobactraceae fam. nov. within the order Rhizobiales of the class Alphaproteobacteria.
- Authors: Akter S, Shazib SUA, Shin MK
- Issue date: 2020 Feb
- Mesobacterium pallidum gen. nov., sp. nov., Heliomarina baculiformis gen. nov., sp. nov. and Oricola indica sp. nov., three novel Alphaproteobacteria members isolated from deep-sea water in the southwest Indian ridge.
- Authors: Kong YH, Ren WT, Xu L, Cheng H, Zhou P, Wang CS, Wu YH, Xu XW
- Issue date: 2022 Feb
- Rhodoligotrophos defluvii sp. nov., isolated from activated sludge.
- Authors: Liu YL, Meng D, Li RR, Gu PF, Fan XY, Huang ZS, Du ZJ, Li Q
- Issue date: 2019 Dec
- Aestuariivirga litoralis gen. nov., sp. nov., a proteobacterium isolated from a water sample, and proposal of Aestuariivirgaceae fam. nov.
- Authors: Li X, Salam N, Li JL, Chen YM, Yang ZW, Han MX, Mou X, Xiao M, Li WJ
- Issue date: 2019 Feb