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dc.contributor.authorAsano, Yasuhito
dc.contributor.authorOikawa, Hiroshi
dc.contributor.authorYasuike, Motoshige
dc.contributor.authorNakamura, Yoji
dc.contributor.authorFujiwara, Atushi
dc.contributor.authorYamamoto, Keigo
dc.contributor.authorNagai, Satoshi
dc.contributor.authorKobayashi, Takanori
dc.contributor.authorGojobori, Takashi
dc.date.accessioned2021-04-05T10:16:46Z
dc.date.available2021-04-05T10:16:46Z
dc.date.issued2019-07-25
dc.identifier.citationAsano, Y., Oikawa, H., Yasuike, M., Nakamura, Y., Fujiwara, A., Yamamoto, K., … Gojobori, T. (2019). Mining of Knowledge Related to Factors Involved in the Aberrant Growth of Plankton. Marine Metagenomics, 249–271. doi:10.1007/978-981-13-8134-8_15
dc.identifier.isbn9789811381331
dc.identifier.isbn9789811381348
dc.identifier.doi10.1007/978-981-13-8134-8_15
dc.identifier.urihttp://hdl.handle.net/10754/668551
dc.description.abstractWe aim to obtain knowledge relating to the causes of aberrant growth of plankton thought to cause problems such as shellfish poisoning, by using data acquired by measuring populations of more than 1000 species of plankton in specific seas areas with a next-generation sequencer. Previous techniques proposed for predicting future time series data from past time series data are difficult to be applied because the number of measurements is small. On the other hand, association rule mining which is one of the classical data mining techniques, is insufficient to obtain knowledge relating to indirect causes, such as “if species B increases, species A increases, and as a result the target species exhibits a characteristic increase.” Therefore, we propose a method for finding association rules relating to increase/decrease of species other than the target species, and also propose a new model for aggregating those rules, named “time series association graph”. We perform knowledge mining using a time series association graph and clustering (community discovery) on the graph to discover knowledge relating to the causes of the aberrant growth of a specified species. We also describe the used codes written in the programming language R.
dc.publisherSpringer Nature
dc.relation.urlhttp://link.springer.com/10.1007/978-981-13-8134-8_15
dc.rightsArchived with thanks to Springer Singapore
dc.titleMining of Knowledge Related to Factors Involved in the Aberrant Growth of Plankton
dc.typeBook Chapter
dc.contributor.departmentBiological and Environmental Science and Engineering (BESE) Division
dc.contributor.departmentBioscience Program
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.eprint.versionPost-print
dc.contributor.institutionFaculty of Information for Innovation and Design, Tokyo University, Tokyo, Japan
dc.contributor.institutionNational Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, Yokohama, Kanagawa, Japan
dc.contributor.institutionResearch Institute of Environment, Agriculture and Fisheries, Osaka Prefecture, Sen-Nan,Osaka, Japan
dc.contributor.institutionKitasato University School of Marine Biosciences, Sagamihara, Japan
dc.identifier.pages249-271
kaust.personGojobori, Takashi


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