Forget About Electron Micrographs: A Novel Guide for Using 3D Models for Quantitative Analysis of Dense Reconstructions
dc.contributor.author | Boges, Daniya | |
dc.contributor.author | Agus, Marco | |
dc.contributor.author | Magistretti, Pierre J. | |
dc.contributor.author | Cali, Corrado | |
dc.date.accessioned | 2020-08-20T08:15:48Z | |
dc.date.available | 2020-08-20T08:15:48Z | |
dc.date.issued | 2020-06-30 | |
dc.identifier.citation | Boges, D. J., Agus, M., Magistretti, P. J., & Calì, C. (2020). Forget About Electron Micrographs: A Novel Guide for Using for Quantitative Analysis of Dense Reconstructions. Neuromethods, 263–304. doi:10.1007/978-1-0716-0691-9_14 | |
dc.identifier.isbn | 9781071606902 | |
dc.identifier.isbn | 9781071606919 | |
dc.identifier.issn | 1940-6045 | |
dc.identifier.issn | 0893-2336 | |
dc.identifier.doi | 10.1007/978-1-0716-0691-9_14 | |
dc.identifier.uri | http://hdl.handle.net/10754/664709 | |
dc.description.abstract | With the rapid evolvement in the automation of serial micrographs, acquiring fast and reliably giga- to terabytes of data is becoming increasingly common. Optical, or physical sectioning, and subsequent imaging of biological tissue at high resolution, offers the chance to postprocess, segment, and reconstruct micro- and nanoscopical structures, and then reveal spatial arrangements previously inaccessible or hardly imaginable with simple, single section, two-dimensional images. In some cases, three-dimensional models highlighted peculiar morphologies in a way that two-dimensional representations cannot be considered representative of that particular object morphology anymore, like mitochondria for instance. Observations like these are taking scientists toward a more common use of 3D models to formulate functional hypothesis, based on morphology. Because such models are so rich in details, we developed tools allowing for performing qualitative, visual assessments, as well as quantification directly in 3D. In this chapter we will revise our working pipeline and show a step-by-step guide to analyze our dataset. | |
dc.publisher | Springer US | |
dc.relation.url | http://link.springer.com/10.1007/978-1-0716-0691-9_14 | |
dc.rights | Archived with thanks to Springer US | |
dc.title | Forget About Electron Micrographs: A Novel Guide for Using 3D Models for Quantitative Analysis of Dense Reconstructions | |
dc.type | Book Chapter | |
dc.contributor.department | Biological and Environmental Sciences and Engineering (BESE) Division | |
dc.contributor.department | Visual Computing Center (VCC) | |
dc.contributor.department | Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division | |
dc.contributor.department | Bioscience Program | |
dc.eprint.version | Post-print | |
dc.contributor.institution | Department of Neuroscience “Rita Levi Montalcini”, Neuroscience Institute Cavalieri Ottolenghi, Università degli studi di Torino, Torino, Italy | |
dc.identifier.volume | 155 | |
dc.identifier.pages | 263-304 | |
kaust.person | Boges, Daniya | |
kaust.person | Agus, Marco | |
kaust.person | Magistretti, Pierre J. | |
kaust.person | Cali, Corrado | |
dc.identifier.eid | 2-s2.0-85088440945 | |
dc.date.published-online | 2020-06-30 | |
dc.date.published-print | 2020 |
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Biological and Environmental Sciences and Engineering (BESE) Division
For more information visit: https://bese.kaust.edu.sa/ -
Bioscience Program
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Visual Computing Center (VCC)
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Book Chapters
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Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
For more information visit: https://cemse.kaust.edu.sa/