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    Additional file 1 of CpG traffic lights are markers of regulatory regions in human genome

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    Type
    Data File
    Authors
    Lioznova, Anna V.
    Khamis, Abdullah M. cc
    Artemov, Artem V.
    Besedina, Elizaveta
    Ramensky, Vasily
    Bajic, Vladimir B. cc
    Kulakovskiy, Ivan V.
    Medvedeva, Yulia A.
    KAUST Department
    Computer Science Program
    Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
    Applied Mathematics and Computational Science Program
    Computational Bioscience Research Center (CBRC)
    Date
    2019
    Permanent link to this record
    http://hdl.handle.net/10754/664423
    
    Metadata
    Show full item record
    Abstract
    Supplementary materials. Figure S1: SCC of the CpG TL located in various gene regions; Figure S2: Distribution of CpG TLs along the genome; Figure S3: TFBS; Table S1: Number of significant SCC between average methylation of genomic region and gene expression; Table S2: Number of significant SCC between CpG methylation and gene expression; Table S3: Number of significant SCC between gene expression and average methylation of the genome region; Table S4: Most enriched with CpG TLs categories of enhancers; Table S5: Names of the cell samples in the study; Table S6: Enhancers = H3K27ac+H3K4me1-H3K4me3; Table S7: Expression data source; Table S8: Methylation data source. (PDF 2562 kb)
    Citation
    Lioznova, A. V., Khamis, A. M., Artemov, A. V., Besedina, E., Ramensky, V., Bajic, V. B., Kulakovskiy, I. V., & Medvedeva, Y. A. (2019). Additional file 1 of CpG traffic lights are markers of regulatory regions in human genome. Figshare. https://doi.org/10.6084/M9.FIGSHARE.7664966.V1
    Publisher
    figshare
    DOI
    10.6084/m9.figshare.7664966.v1
    Relations
    Is Supplement To:
    • [Article]
      Lioznova AV, Khamis AM, Artemov AV, Besedina E, Ramensky V, et al. (2019) CpG traffic lights are markers of regulatory regions in human genome. BMC Genomics 20. Available: http://dx.doi.org/10.1186/s12864-018-5387-1.. DOI: 10.1186/s12864-018-5387-1 HANDLE: 10754/631008
    ae974a485f413a2113503eed53cd6c53
    10.6084/m9.figshare.7664966.v1
    Scopus Count
    Collections
    Applied Mathematics and Computational Science Program; Computer Science Program; Computational Bioscience Research Center (CBRC); Datasets; Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division

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