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dc.contributor.authorOgura, Atsushi
dc.contributor.authorAkizuki, Yuki
dc.contributor.authorImoda, Hiroaki
dc.contributor.authorMineta, Katsuhiko
dc.contributor.authorGojobori, Takashi
dc.contributor.authorNagai, Satoshi
dc.date.accessioned2020-07-16T05:59:14Z
dc.date.available2020-07-16T05:59:14Z
dc.date.issued2018
dc.identifier.citationOgura, A., Akizuki, Y., Imoda, H., Mineta, K., Gojobori, T., & Nagai, S. (2018). Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom. Figshare. https://doi.org/10.6084/M9.FIGSHARE.C.4275500.V1
dc.identifier.doi10.6084/m9.figshare.c.4275500.v1
dc.identifier.urihttp://hdl.handle.net/10754/664220
dc.description.abstractAbstract Background Diatoms play a great role in carbon fixation with about 20% of the whole fixation in the world. However, harmful algal bloom as known as red tide is a major problem in environment and fishery industry. Even though intensive studies have been conducted so far, the molecular mechanism behind harmful algal bloom was not fully understood. There are two major diatoms have been sequenced, but more diatoms should be examined at the whole genome level, and evolutionary genome studies were required to understand the landscape of molecular mechanism of the harmful algal bloom. Results Here we sequenced the genome of Skeletonema costatum, which is the dominant diatom in Japan causing a harmful algal bloom, and also performed RNA-sequencing analysis for conditions where harmful algal blooms often occur. As results, we found that both evolutionary genomic and comparative transcriptomic studies revealed genes for oxidative stress response and response to cytokinin is a key for the proliferation of the diatom. Conclusions Diatoms causing harmful algal blooms have gained multi-copy of genes related to oxidative stress response and response to cytokinin and obtained an ability to intensive gene expression at the blooms.
dc.publisherfigshare
dc.subjectCell Biology
dc.subjectGenetics
dc.subjectEvolutionary Biology
dc.subject59999 Environmental Sciences not elsewhere classified
dc.subjectEcology
dc.subject69999 Biological Sciences not elsewhere classified
dc.subjectMarine Biology
dc.subjectInorganic Chemistry
dc.subjectPlant Biology
dc.titleComparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom
dc.typeDataset
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentBioscience Program
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
dc.contributor.institutionNagahama Institute of Bioscience and Technology, 1266 Tamura, Nagahama, Shiga, 5260829, Japan.
dc.contributor.institutionNational Research Institute of Fisheries Science, 2-12-4 Fukuura, Kanazawa, Yokohama, Kanagawa, 236-8648, Japan.
kaust.personMineta, Katsuhiko
kaust.personGojobori, Takashi
dc.relation.issupplementtoDOI:10.1186/s12864-018-5144-5
display.relations<b> Is Supplement To:</b><br/> <ul> <li><i>[Article]</i> <br/> Ogura A, Akizuki Y, Imoda H, Mineta K, Gojobori T, et al. (2018) Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom. BMC Genomics 19. Available: http://dx.doi.org/10.1186/s12864-018-5144-5.. DOI: <a href="https://doi.org/10.1186/s12864-018-5144-5" >10.1186/s12864-018-5144-5</a> HANDLE: <a href="http://hdl.handle.net/10754/629427">10754/629427</a></li></ul>


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