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dc.contributor.authorMarasco, Ramona
dc.contributor.authorROLLI, Eleonora
dc.contributor.authorFusi, Marco
dc.contributor.authorMichoud, Gregoire
dc.contributor.authorDaffonchio, Daniele
dc.date.accessioned2020-07-02T14:25:08Z
dc.date.available2020-07-02T14:25:08Z
dc.date.issued2018
dc.identifier.citationMarasco, R., Rolli, E., Fusi, M., Michoud, G., & Daffonchio, D. (2018). Additional file 1: Table S1. of Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality. Figshare. https://doi.org/10.6084/M9.FIGSHARE.5755572.V1
dc.identifier.doi10.6084/m9.figshare.5755572.v1
dc.identifier.urihttp://hdl.handle.net/10754/663981
dc.description.abstractInformation about rootstocks and ungrafted grape, Table S2. Number of sequences, total OTUs and diversity indices, Table S3. Pair-wise post hoc test comparison of rootstock bacterial communities associated to grape root system, Table S4. Main test comparison of bacterial’ beta-diversity Table S5. (A) Cross Validation of ‘Fraction’ × ‘Rootstock’ groups. (B) Estimation of beta-diversity variation’ components, Table S6. Rootstock’ specific and shared OTUs, Table S7. Phylogenetic affiliation of OTUs, Table S8. Linear discriminant analysis Effect Size of bacterial OTUs in root and rhizosphere, Table S9. Main phyla and genera contributing to the dissimilarity among rootstocks, Table S10. Phyla and genera contribution to rootstocks dissimilarity, Table S11. Relative abundance and phylogenetic affiliation of OTUs’ core, Table S12. Number of sequence and relative abundance of rootstock specific OTUs, Table S13. Topological property of co-occurring bacterial networks, Table S14. Nodes tables of co-occurring bacterial networks, Table S15. Edge tables of co-occurring bacterial network, Table S16. Quality statistical analysis of Tax4Fun results, Table S17. KEGG enzyme-encoding gene for PGP traits and their abundances in the predicting functional profiles of rootstock bacterial communities, Table S18. Number of cultivable bacteria expressed as colony-forming unit per gram of sample, Table S19. Phylogenetic identification of one representative bacterial isolates for each ITS-haplotype, Table S20. Phylogenetic identification of bacteria isolates for each rootstock, Table S21. Screening of bacterial isolates for PGP activities, Figure S1. Sampling scheme, Figure S2. Beta-diversity and functional prediction, Figure S3. Alpha-diversity, Figure S4. Relative abundance of genera belonging to Actinobacteria, Alphaproteobacteria and Gammaproteobacteria, Figure S5. Nodes degree distribution, Figure S6. Degree distribution of node in the third percentile, Figure S7. Phylogenetic tree of ‘Candidatus Phytoplasma’, Figure S8. Relative abundances of predicted PGP traits, Figure S9. Rarefaction curve and Good’s coverage values. (DOCX 1603 kb)
dc.publisherfigshare
dc.subjectSpace Science
dc.subjectMedicine
dc.subjectMicrobiology
dc.subjectGenetics
dc.subjectEvolutionary Biology
dc.subject59999 Environmental Sciences not elsewhere classified
dc.subjectEcology
dc.subject69999 Biological Sciences not elsewhere classified
dc.subject110309 Infectious Diseases
dc.titleAdditional file 1: Table S1. of Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality
dc.typeData File
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentBioscience Program
dc.contributor.departmentExtreme Systems Microbiology Lab
dc.contributor.departmentRed Sea Research Center (RSRC)
dc.contributor.institutionDepartment of Food Environmental and Nutritional Sciences, Università degli Studi di Milano, 20133, Milano, Italy.
kaust.personMarasco, Ramona
kaust.personFusi, Marco
kaust.personMichoud, Gregoire
kaust.personDaffonchio, Daniele
dc.relation.issupplementtoDOI:10.1186/s40168-017-0391-2
display.relations<b> Is Supplement To:</b><br/> <ul> <li><i>[Article]</i> <br/> Marasco R, Rolli E, Fusi M, Michoud G, Daffonchio D (2018) Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality. Microbiome 6. Available: http://dx.doi.org/10.1186/s40168-017-0391-2.. DOI: <a href="https://doi.org/10.1186/s40168-017-0391-2" >10.1186/s40168-017-0391-2</a> HANDLE: <a href="http://hdl.handle.net/10754/626863">10754/626863</a></li></ul>


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