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dc.contributor.authorBaig, Hasan
dc.contributor.authorFontanarossa, Pedro
dc.contributor.authorKulkarni, Vishwesh
dc.contributor.authorMcLaughlin, James
dc.contributor.authorVaidyanathan, Prashant
dc.contributor.authorBartley, Bryan
dc.contributor.authorBhatia, Swapnil
dc.contributor.authorBhakta, Shyam
dc.contributor.authorBissell, Michael
dc.contributor.authorClancy, Kevin
dc.contributor.authorCox, Robert Sidney
dc.contributor.authorMoreno, Angel Goñi
dc.contributor.authorGorochowski, Thomas
dc.contributor.authorGrunberg, Raik
dc.contributor.authorLuna, Augustin
dc.contributor.authorMadsen, Curtis
dc.contributor.authorMisirli, Goksel
dc.contributor.authorNguyen, Tramy
dc.contributor.authorLe Novere, Nicolas
dc.contributor.authorPalchick, Zachary
dc.contributor.authorPocock, Matthew
dc.contributor.authorRoehner, Nicholas
dc.contributor.authorSauro, Herbert
dc.contributor.authorScott-Brown, James
dc.contributor.authorSexton, John T
dc.contributor.authorStan, Guy-Bart
dc.contributor.authorTabor, Jeffrey J
dc.contributor.authorVilar, Marta Vazquez
dc.contributor.authorVoigt, Christopher A
dc.contributor.authorWipat, Anil
dc.contributor.authorZong, David
dc.contributor.authorZundel, Zach
dc.contributor.authorBeal, Jacob
dc.contributor.authorMyers, Chris
dc.identifier.citationBaig, H., Fontanarossa, P., Kulkarni, V., McLaughlin, J., Vaidyanathan, P., Bartley, B., … Myers, C. (2020). Synthetic biology open language visual (SBOL visual) version 2.2. Journal of Integrative Bioinformatics, 0(0). doi:10.1515/jib-2020-0014
dc.description.abstractPeople who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species. Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.2 of SBOL Visual, which builds on the prior SBOL Visual 2.1 in several ways. First, the grounding of molecular species glyphs is changed from BioPAX to SBO, aligning with the use of SBO terms for interaction glyphs. Second, new glyphs are added for proteins, introns, and polypeptide regions (e. g., protein domains), the prior recommended macromolecule glyph is deprecated in favor of its alternative, and small polygons are introduced as alternative glyphs for simple chemicals.
dc.publisherWalter de Gruyter GmbH
dc.rightsThis is an open access article licensed under the Creative Commons Attribution 4.0 Public License.
dc.titleSynthetic biology open language visual (SBOL visual) version 2.2.
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.identifier.journalJournal of integrative bioinformatics
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionUniversity of Connecticut, Storrs, USA
dc.contributor.institutionUniversity of Utah, Salt Lake City, USA
dc.contributor.institutionUniversity of Warwick, Coventry, UK
dc.contributor.institutionNewcastle University, Newcastle upon Tyne, UK
dc.contributor.institutionMicrosoft Research, Cambridge, UK
dc.contributor.institutionRaytheon BBN Technologies, Cambridge, USA
dc.contributor.institutionBoston University, Boston, USA
dc.contributor.institutionRice University, Houston, USA
dc.contributor.institutionShipyard Toolchains LLC, Emeryville, USA
dc.contributor.institutionThermo Fisher Scientific, San Diego, USA
dc.contributor.institutionKobe University, Kobe, Japan
dc.contributor.institutionUniversity of Bristol, Bristol, UK
dc.contributor.institutionHarvard Medical School, Boston, USA
dc.contributor.institutionKeele University, Keele, UK
dc.contributor.institutionBabraham Institute, Cambridge, UK
dc.contributor.institutionZymergen, Emeryville, USA
dc.contributor.institutionTuring Ate My Hamster, Ltd., Newcastle, UK
dc.contributor.institutionUniversity of Washington, Seattle, USA
dc.contributor.institutionUniversity of Oxford, Oxford, UK
dc.contributor.institutionImperial College, London, UK
dc.contributor.institutionUniversitat Politecnica de Valencia, Valencia, Spain
dc.contributor.institutionMIT, Cambridge, USA
kaust.personGrunberg, Raik

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This is an open access article licensed under the Creative Commons Attribution 4.0 Public License.
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