Synthetic biology open language visual (SBOL visual) version 2.2.
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[16134516 - Journal of Integrative Bioinformatics] Synthetic biology open language visual (SBOL visual) version 2.2.pdf
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ArticleAuthors
Baig, HasanFontanarossa, Pedro

Kulkarni, Vishwesh
McLaughlin, James
Vaidyanathan, Prashant
Bartley, Bryan
Bhatia, Swapnil
Bhakta, Shyam
Bissell, Michael
Clancy, Kevin
Cox, Robert Sidney
Moreno, Angel Goñi
Gorochowski, Thomas
Grunberg, Raik
Luna, Augustin
Madsen, Curtis
Misirli, Goksel
Nguyen, Tramy
Le Novere, Nicolas
Palchick, Zachary
Pocock, Matthew
Roehner, Nicholas
Sauro, Herbert
Scott-Brown, James
Sexton, John T
Stan, Guy-Bart
Tabor, Jeffrey J
Vilar, Marta Vazquez
Voigt, Christopher A
Wipat, Anil
Zong, David

Zundel, Zach
Beal, Jacob

Myers, Chris
Date
2020-06-11Online Publication Date
2020-06-11Print Publication Date
2020-06-10Submitted Date
2020-03-30Permanent link to this record
http://hdl.handle.net/10754/663693
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Show full item recordAbstract
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species. Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.2 of SBOL Visual, which builds on the prior SBOL Visual 2.1 in several ways. First, the grounding of molecular species glyphs is changed from BioPAX to SBO, aligning with the use of SBO terms for interaction glyphs. Second, new glyphs are added for proteins, introns, and polypeptide regions (e. g., protein domains), the prior recommended macromolecule glyph is deprecated in favor of its alternative, and small polygons are introduced as alternative glyphs for simple chemicals.Citation
Baig, H., Fontanarossa, P., Kulkarni, V., McLaughlin, J., Vaidyanathan, P., Bartley, B., … Myers, C. (2020). Synthetic biology open language visual (SBOL visual) version 2.2. Journal of Integrative Bioinformatics, 0(0). doi:10.1515/jib-2020-0014Publisher
Walter de Gruyter GmbHPubMed ID
32543457Additional Links
https://www.degruyter.com/view/journals/jib/ahead-of-print/article-10.1515-jib-2020-0014/article-10.1515-jib-2020-0014.xmlae974a485f413a2113503eed53cd6c53
10.1515/jib-2020-0014
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Except where otherwise noted, this item's license is described as This is an open access article licensed under the Creative Commons Attribution 4.0 Public License.
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