BioHackathon 2015: Semantics of data for life sciences and reproducible research
Type
ArticleAuthors
Katayama, Toshiaki
Vos, Rutger A.

Mishima, Hiroyuki
Kawano, Shin

Kawashima, Shuichi
Kim, Jin Dong
Moriya, Yuki
Tokimatsu, Toshiaki
Yamaguchi, Atsuko

Yamamoto, Yasunori
Wu, Hongyan
Amstutz, Peter
Antezana, Erick

Aoki, Nobuyuki P.
Arakawa, Kazuharu
Bolleman, Jerven T.

Bolton, Evan
Bonnal, Raoul J.P.
Bono, Hidemasa

Burger, Kees
Chiba, Hirokazu
Cohen, Kevin B.
Deutsch, Eric W.
Fernández-Breis, Jesualdo T.
Fu, Gang
Fujisawa, Takatomo
Fukushima, Atsushi

García, Alexander
Goto, Naohisa
Groza, Tudor
Hercus, Colin
Hoehndorf, Robert

Itaya, Kotone
Juty, Nick
Kawashima, Takeshi
Kim, Jee Hyub
Kinjo, Akira R.
Kotera, Masaaki
Kozaki, Kouji

Kumagai, Sadahiro
Kushida, Tatsuya
Lütteke, Thomas

Matsubara, Masaaki

Miyamoto, Joe
Mohsen, Attayeb

Mori, Hiroshi
Naito, Yuki
Nakazato, Takeru
Nguyen-Xuan, Jeremy
Nishida, Kozo
Nishida, Naoki
Nishide, Hiroyo
Ogishima, Soichi
Ohta, Tazro
Okuda, Shujiro
Paten, Benedict
Perret, Jean Luc
Prathipati, Philip
Prins, Pjotr
Queralt-Rosinach, Núria

Shinmachi, Daisuke
Suzuki, Shinya

Tabata, Tsuyosi
Takatsuki, Terue
Taylor, Kieron

Thompson, Mark
Uchiyama, Ikuo
Vieira, Bruno
Wei, Chih Hsuan
Wilkinson, Mark

Yamada, Issaku

Yamanaka, Ryota
Yoshitake, Kazutoshi
Yoshizawa, Akiyasu C.
Dumontier, Michel
Kosaki, Kenjiro
Takagi, Toshihisa
KAUST Department
Bio-Ontology Research Group (BORG)Computational Bioscience Research Center (CBRC)
Computer Science Program
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Date
2020-02-24Permanent link to this record
http://hdl.handle.net/10754/662837
Metadata
Show full item recordAbstract
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.Citation
Vos, R. A., Katayama, T., Mishima, H., Kawano, S., Kawashima, S., Kim, J.-D., … Yamamoto, Y. (2020). BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research, 9, 136. doi:10.12688/f1000research.18236.1Sponsors
BH15 is supported by the Integrated Database Project (Ministry of Education, Culture, Sports, Science and Technology of Japan) and hosted by the National Bioscience Database Center (NBDC) and the Database Center for Life Science (DBCLS). We thank Yuji Kohara, the director of DBCLS, for his support of the BioHackathons.Publisher
F1000 Research LtdJournal
F1000ResearchAdditional Links
https://f1000research.com/articles/9-136/v1https://f1000research.com/articles/9-136/v1/pdf
https://f1000research.com/articles/9-136/v1/pdf
ae974a485f413a2113503eed53cd6c53
10.12688/f1000research.18236.1
Scopus Count
Except where otherwise noted, this item's license is described as This is an open access peer review report distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.