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dc.contributor.authorAbrouk, Michael
dc.contributor.authorAhmed, Hanin Ibrahim
dc.contributor.authorCubry, Philippe
dc.contributor.authorŠimoníková, Denisa
dc.contributor.authorCauet, Stéphane
dc.contributor.authorPailles, Yveline
dc.contributor.authorBettgenhaeuser, Jan
dc.contributor.authorGapa, Liubov
dc.contributor.authorScarcelli, Nora
dc.contributor.authorCouderc, Marie
dc.contributor.authorZekraoui, Leila
dc.contributor.authorKathiresan, Nagarajan
dc.contributor.authorČížková, Jana
dc.contributor.authorHřibová, Eva
dc.contributor.authorDoležel, Jaroslav
dc.contributor.authorArribat, Sandrine
dc.contributor.authorBergès, Hélène
dc.contributor.authorWieringa, Jan J.
dc.contributor.authorGueye, Mathieu
dc.contributor.authorKane, Ndjido A.
dc.contributor.authorLeclerc, Christian
dc.contributor.authorCausse, Sandrine
dc.contributor.authorVancoppenolle, Sylvie
dc.contributor.authorBillot, Claire
dc.contributor.authorWicker, Thomas
dc.contributor.authorVigouroux, Yves
dc.contributor.authorBarnaud, Adeline
dc.contributor.authorKrattinger, Simon G.
dc.date.accessioned2020-09-13T13:02:26Z
dc.date.available2020-04-19T12:47:35Z
dc.date.available2020-09-13T13:02:26Z
dc.date.issued2020-09-08
dc.date.submitted2020-04-13
dc.identifier.citationAbrouk, M., Ahmed, H. I., Cubry, P., Šimoníková, D., Cauet, S., Pailles, Y., … Krattinger, S. G. (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communications, 11(1). doi:10.1038/s41467-020-18329-4
dc.identifier.issn2041-1723
dc.identifier.pmid32901040
dc.identifier.doi10.1038/s41467-020-18329-4
dc.identifier.doi10.1101/2020.04.11.037671
dc.identifier.urihttp://hdl.handle.net/10754/662572
dc.description.abstractAbstract Sustainable food production in the context of climate change necessitates diversification of agriculture and a more efficient utilization of plant genetic resources. Fonio millet (Digitaria exilis) is an orphan African cereal crop with a great potential for dryland agriculture. Here, we establish high-quality genomic resources to facilitate fonio improvement through molecular breeding. These include a chromosome-scale reference assembly and deep re-sequencing of 183 cultivated and wild Digitaria accessions, enabling insights into genetic diversity, population structure, and domestication. Fonio diversity is shaped by climatic, geographic, and ethnolinguistic factors. Two genes associated with seed size and shattering showed signatures of selection. Most known domestication genes from other cereal models however have not experienced strong selection in fonio, providing direct targets to rapidly improve this crop for agriculture in hot and dry environments.
dc.description.sponsorshipWe are grateful to Vinicius M. Lube, Samantha Bazan, Ablaye Ngom, Marie Piquet, Hélène Adam, and Carole Gauron for their technical assistance in Herbarium sampling and photography. Cirad herbarium samples of Digitaria longiflora were provided by Samantha Bazan (ALF [http://publish.plantnet-project.org/]). We thank Soukeye Conde for valuable insight, funded by the project Cultivar, reference ANR-16-IDEX-0006, through the Investissements d’avenir program (Labex Agro: ANR-10-LABX-0001-01). This work was supported by the CIRAD-UMR AGAP and IRD UMR DIADE HPC Data Center of the South Green Bioinformatics platform [http://www.southgreen.fr/] and the Center for Desert Agriculture of the King Abdullah University of Science and Technology (KAUST). D.S., J.C., E.H. and J.D. were in part supported by the European Regional Development Fund OPVVV project ‘Plants as a tool for sustainable development’ number CZ.02.1.01/0.0/0.0/16_019/0000827.
dc.publisherSpringer Nature
dc.relation.urlhttp://www.nature.com/articles/s41467-020-18329-4
dc.rightsThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.
dc.rights.urihttps://creativecommons.org/licenses/by/4.0
dc.titleFonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate
dc.typeArticle
dc.contributor.departmentBiological and Environmental Science and Engineering (BESE) Division
dc.contributor.departmentBioscience
dc.contributor.departmentCenter for Desert Agriculture
dc.contributor.departmentCenter for Desert Agriculture, Biological and Environmental Science & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
dc.contributor.departmentPlant Science
dc.identifier.journalNature Communications
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Hana for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
dc.contributor.institutionCNRGV Plant Genomics Center, INRAE, Toulouse, France.
dc.contributor.institutionDIADE, Univ Montpellier, IRD, Montpellier, France.
dc.contributor.institutionInari Agriculture, One Kendall Square Building 600/700 Cambridge, MA 02139.
dc.contributor.institutionNaturalis Biodiversity Center, Leiden, the Netherlands.
dc.contributor.institutionLaboratoire de Botanique, Département de Botanique et Géologie, IFAN Ch. A. Diop/UCAD, Dakar, Senegal
dc.contributor.institutionSenegalese Agricultural Research Institute, Dakar, Senegal.
dc.contributor.institutionLaboratoire Mixte International LAPSE, Dakar, Senegal.
dc.contributor.institutionCIRAD, UMR AGAP, Montpellier, France.
dc.contributor.institutionAGAP, Université de Montpellier, Cirad, INRAE, Institut Agro, Montpellier, France.
dc.contributor.institutionDepartment of Plant and Microbial Biology, University of Zurich, Switzerland.
dc.identifier.volume11
dc.identifier.issue1
kaust.personAbrouk, Michael
kaust.personAhmed, Hanin Ibrahim
kaust.personPailles, Yveline
kaust.personBettgenhaeuser, Jan
kaust.personGapa, Liubov
kaust.personKrattinger, Simon G.
dc.date.accepted2020-08-16
dc.relation.issupplementedbybioproject:PRJEB36539
dc.relation.issupplementedbyDOI:10.5061/dryad.2v6wwpzj0
dc.relation.issupplementedbygithub:Africrop/fonio_smcpp
refterms.dateFOA2020-04-19T12:48:58Z
display.relations<b>Is Supplemented By:</b><br/> <ul><li><i>[Bioproject]</i> <br/> Title: Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Publication Date: 2020-04-18. bioproject: <a href="https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB36539" >PRJEB36539</a> Handle: <a href="http://hdl.handle.net/10754/666537" >10754/666537</a></a></li><li><i>[Dataset]</i> <br/> Abrouk, M., Ahmed, H. I., Cubry, P., Šimoníková, D., Cauet, S., Pailles, Y., Bettgenhaeuser, J., Gapa, L., Scarcelli, N., Couderc, M., Zekraoui, L., Kathiresan, N., Čížková, J., Hřibová, E., Doležel, J., Arribat, S., Bergès, H., Wieringa, J., Gueye, M., … Krattinger, S. (2020). <i>Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate</i> (Version 11) [Data set]. Dryad. https://doi.org/10.5061/DRYAD.2V6WWPZJ0. DOI: <a href="https://doi.org/10.5061/dryad.2v6wwpzj0" >10.5061/dryad.2v6wwpzj0</a> Handle: <a href="http://hdl.handle.net/10754/667866" >10754/667866</a></a></li><li><i>[Software]</i> <br/> Title: Africrop/fonio_smcpp: fonio_smcpp. Publication Date: 2020-03-30. github: <a href="https://github.com/Africrop/fonio_smcpp" >Africrop/fonio_smcpp</a> Handle: <a href="http://hdl.handle.net/10754/667875" >10754/667875</a></a></li></ul>
kaust.acknowledged.supportUnitCenter for Desert Agriculture
dc.date.published-online2020-09-08
dc.date.published-print2020-12


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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.
Except where otherwise noted, this item's license is described as This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.
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