Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate
Type
ArticleAuthors
Abrouk, Michael
Ahmed, Hanin Ibrahim
Cubry, Philippe
Šimoníková, Denisa
Cauet, Stéphane
Pailles, Yveline
Bettgenhaeuser, Jan
Gapa, Liubov
Scarcelli, Nora
Couderc, Marie
Zekraoui, Leila
Kathiresan, Nagarajan
Čížková, Jana
Hřibová, Eva
Doležel, Jaroslav
Arribat, Sandrine
Bergès, Hélène
Wieringa, Jan J.
Gueye, Mathieu
Kane, Ndjido A.
Leclerc, Christian
Causse, Sandrine
Vancoppenolle, Sylvie
Billot, Claire
Wicker, Thomas
Vigouroux, Yves
Barnaud, Adeline
Krattinger, Simon G.
KAUST Department
Biological and Environmental Sciences and Engineering (BESE) DivisionBioscience
Center for Desert Agriculture, Biological and Environmental Science & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Desert Agriculture Initiative
Plant Science
Date
2020-09-08Online Publication Date
2020-09-08Print Publication Date
2020-12Submitted Date
2020-04-13Permanent link to this record
http://hdl.handle.net/10754/662572Metadata
Show full item recordAbstract
Abstract Sustainable food production in the context of climate change necessitates diversification of agriculture and a more efficient utilization of plant genetic resources. Fonio millet (Digitaria exilis) is an orphan African cereal crop with a great potential for dryland agriculture. Here, we establish high-quality genomic resources to facilitate fonio improvement through molecular breeding. These include a chromosome-scale reference assembly and deep re-sequencing of 183 cultivated and wild Digitaria accessions, enabling insights into genetic diversity, population structure, and domestication. Fonio diversity is shaped by climatic, geographic, and ethnolinguistic factors. Two genes associated with seed size and shattering showed signatures of selection. Most known domestication genes from other cereal models however have not experienced strong selection in fonio, providing direct targets to rapidly improve this crop for agriculture in hot and dry environments.Citation
Abrouk, M., Ahmed, H. I., Cubry, P., Šimoníková, D., Cauet, S., Pailles, Y., … Krattinger, S. G. (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communications, 11(1). doi:10.1038/s41467-020-18329-4Sponsors
We are grateful to Vinicius M. Lube, Samantha Bazan, Ablaye Ngom, Marie Piquet, Hélène Adam, and Carole Gauron for their technical assistance in Herbarium sampling and photography. Cirad herbarium samples of Digitaria longiflora were provided by Samantha Bazan (ALF [http://publish.plantnet-project.org/]). We thank Soukeye Conde for valuable insight, funded by the project Cultivar, reference ANR-16-IDEX-0006, through the Investissements d’avenir program (Labex Agro: ANR-10-LABX-0001-01). This work was supported by the CIRAD-UMR AGAP and IRD UMR DIADE HPC Data Center of the South Green Bioinformatics platform [http://www.southgreen.fr/] and the Center for Desert Agriculture of the King Abdullah University of Science and Technology (KAUST). D.S., J.C., E.H. and J.D. were in part supported by the European Regional Development Fund OPVVV project ‘Plants as a tool for sustainable development’ number CZ.02.1.01/0.0/0.0/16_019/0000827.Publisher
Springer NatureJournal
Nature CommunicationsPubMed ID
32901040Additional Links
http://www.nature.com/articles/s41467-020-18329-4Relations
Is Supplemented By:- [Bioproject]
Title: Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Publication Date: 2020-04-18. bioproject: PRJEB36539 Handle: 10754/666537 - [Dataset]
Abrouk, M., Ahmed, H. I., Cubry, P., Šimoníková, D., Cauet, S., Pailles, Y., Bettgenhaeuser, J., Gapa, L., Scarcelli, N., Couderc, M., Zekraoui, L., Kathiresan, N., Čížková, J., Hřibová, E., Doležel, J., Arribat, S., Bergès, H., Wieringa, J., Gueye, M., … Krattinger, S. (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate (Version 11) [Data set]. Dryad. https://doi.org/10.5061/DRYAD.2V6WWPZJ0. DOI: 10.5061/dryad.2v6wwpzj0 Handle: 10754/667866 - [Software]
Title: Africrop/fonio_smcpp: fonio_smcpp. Publication Date: 2020-03-30. github: Africrop/fonio_smcpp Handle: 10754/667875
Scopus Count
Except where otherwise noted, this item's license is described as This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.