Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum.
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Type
ArticleKAUST Department
BioinformaticsBiological and Environmental Science and Engineering (BESE) Division
Bioscience Program
Center for Desert Agriculture
Computational Bioscience Research Center (CBRC)
Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division
DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
Hirt Lab
Plant Science
Date
2020-03-14Online Publication Date
2020-03-14Print Publication Date
2020-08Embargo End Date
2021-03-16Submitted Date
2019-12-18Permanent link to this record
http://hdl.handle.net/10754/662206
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Show full item recordAbstract
Cellulosimicrobium sp. JZ28, a root endophytic bacterium from the desert plant Panicum turgidum, was previously identified as a plant growth-promoting bacterium. The genome of JZ28 consists of a 4378,193 bp circular chromosome and contains 3930 CDSs with an average GC content of 74.5%. Whole-genome sequencing analysis revealed that JZ28 was closely related to C. aquatile 3 bp. The genome harbors genes responsible for protection against oxidative, osmotic and salinity stresses, such as the production of osmoprotectants. It also contains genes with a role in the production of volatiles, such as hydrogen sulfide, which promote biotic and abiotic stress tolerance in plants. The presence of three copies of chitinase genes indicates a possible role of JZ28 as biocontrol agent against fungal pathogens, while a number of genes for the degradation of plant biopolymers indicates potential application in industrial processes. Genome sequencing and mining of culture-dependent collections of bacterial endophytes from desert plants provide new opportunities for biotechnological applications.Citation
Eida, A. A., Bougouffa, S., Alam, I., Saad, M. M., & Hirt, H. (2020). Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum. Archives of Microbiology. doi:10.1007/s00203-020-01859-2Sponsors
The work presented is part of the DARWIN21 project (https://www.darwin21.org/), with the objective to improve sustainable agriculture on arid lands by exploiting microbes isolated from pioneer desert plants that are able to survive in extreme environmental conditions. The authors would thank all members of the Hirt lab, CDA management team and the Bioscience Core Labs in KAUST for the technical assistance and for their help in many aspects of this work.The work was funded by KAUST baseline research project BAS/1/1062-01-01 of H.H
Publisher
Springer NatureJournal
Archives of microbiologyAdditional Links
https//rdcu.be/b2Yw3Relations
Is Supplemented By:- [Bioproject]
Title: Endophytic bacterial strains isolated from roots of desert plantsPublication Date: 2016-10-05. bioproject: PRJNA345401 Handle: 10754/666556
ae974a485f413a2113503eed53cd6c53
10.1007/s00203-020-01859-2