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    Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum.

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    JZ28_Archives of Microbiology_marked changes_24.2.2020 (1).pdf
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    Description:
    Accepted manuscript
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    Type
    Article
    Authors
    Eida, Abdul Aziz cc
    Bougouffa, Salim cc
    Alam, Intikhab
    Saad, Maged M
    Hirt, Heribert cc
    KAUST Department
    Bioinformatics
    Biological and Environmental Science and Engineering (BESE) Division
    Bioscience Program
    Center for Desert Agriculture
    Computational Bioscience Research Center (CBRC)
    Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division
    DARWIN21, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.
    Hirt Lab
    Plant Science
    Date
    2020-03-14
    Online Publication Date
    2020-03-14
    Print Publication Date
    2020-08
    Embargo End Date
    2021-03-16
    Submitted Date
    2019-12-18
    Permanent link to this record
    http://hdl.handle.net/10754/662206
    
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    Abstract
    Cellulosimicrobium sp. JZ28, a root endophytic bacterium from the desert plant Panicum turgidum, was previously identified as a plant growth-promoting bacterium. The genome of JZ28 consists of a 4378,193 bp circular chromosome and contains 3930 CDSs with an average GC content of 74.5%. Whole-genome sequencing analysis revealed that JZ28 was closely related to C. aquatile 3 bp. The genome harbors genes responsible for protection against oxidative, osmotic and salinity stresses, such as the production of osmoprotectants. It also contains genes with a role in the production of volatiles, such as hydrogen sulfide, which promote biotic and abiotic stress tolerance in plants. The presence of three copies of chitinase genes indicates a possible role of JZ28 as biocontrol agent against fungal pathogens, while a number of genes for the degradation of plant biopolymers indicates potential application in industrial processes. Genome sequencing and mining of culture-dependent collections of bacterial endophytes from desert plants provide new opportunities for biotechnological applications.
    Citation
    Eida, A. A., Bougouffa, S., Alam, I., Saad, M. M., & Hirt, H. (2020). Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum. Archives of Microbiology. doi:10.1007/s00203-020-01859-2
    Sponsors
    The work presented is part of the DARWIN21 project (https://www.darwin21.org/), with the objective to improve sustainable agriculture on arid lands by exploiting microbes isolated from pioneer desert plants that are able to survive in extreme environmental conditions. The authors would thank all members of the Hirt lab, CDA management team and the Bioscience Core Labs in KAUST for the technical assistance and for their help in many aspects of this work.
    The work was funded by KAUST baseline research project BAS/1/1062-01-01 of H.H
    Publisher
    Springer Nature
    Journal
    Archives of microbiology
    DOI
    10.1007/s00203-020-01859-2
    Additional Links
    https//rdcu.be/b2Yw3
    Relations
    Is Supplemented By:
    • [Bioproject]
      Title: Endophytic bacterial strains isolated from roots of desert plantsPublication Date: 2016-10-05. bioproject: PRJNA345401 Handle: 10754/666556
    ae974a485f413a2113503eed53cd6c53
    10.1007/s00203-020-01859-2
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division; Bioscience Program; Computational Bioscience Research Center (CBRC); Center for Desert Agriculture; Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division

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