LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.
| dc.contributor.author | Fukasawa, Yoshinori | |
| dc.contributor.author | Ermini, Luca | |
| dc.contributor.author | Wang, Hai | |
| dc.contributor.author | Carty, Karen | |
| dc.contributor.author | Cheung, Ming Sin | |
| dc.date.accessioned | 2020-02-13T11:02:05Z | |
| dc.date.available | 2020-02-13T11:02:05Z | |
| dc.date.issued | 2020-02-10 | |
| dc.date.submitted | 2019-10-26 | |
| dc.identifier.citation | Fukasawa, Y., Ermini, L., Wang, H., Carty, K., & Cheung, M.-S. (2020). LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data. G3: Genes|Genomes|Genetics, g3.400864.2019. doi:10.1534/g3.119.400864 | |
| dc.identifier.doi | 10.1534/g3.119.400864 | |
| dc.identifier.uri | http://hdl.handle.net/10754/661513 | |
| dc.description.abstract | We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly. | |
| dc.description.sponsorship | This work was supported by Core Labs of King Abdullah University of Science and Technology. | |
| dc.publisher | Genetics Society of America | |
| dc.relation.url | http://g3journal.org/lookup/doi/10.1534/g3.119.400864 | |
| dc.relation.url | https://www.g3journal.org/content/ggg/early/2020/02/10/g3.119.400864.full.pdf | |
| dc.rights | Archived with thanks to G3 (Bethesda, Md.) | |
| dc.title | LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data. | |
| dc.type | Article | |
| dc.contributor.department | Bioinformatics | |
| dc.contributor.department | Bioscience Core Lab | |
| dc.contributor.department | Sanger and Third Generation Sequencing | |
| dc.identifier.journal | G3 (Bethesda, Md.) | |
| dc.eprint.version | Post-print | |
| kaust.person | Fukasawa, Yoshinori | |
| kaust.person | Ermini, Luca | |
| kaust.person | Wang, Hai | |
| kaust.person | Carty, Karen | |
| kaust.person | Cheung, Ming Sin | |
| dc.date.accepted | 2020-02-01 | |
| dc.relation.issupplementedby | DOI:10.25387/g3.11516004.v1 | |
| refterms.dateFOA | 2020-02-13T11:04:01Z | |
| display.relations | <b>Is Supplemented By:</b><br/> <ul><li><i>[Dataset]</i> <br/> Fukasawa, Y., Ermini, L., Wang, H., Carty, K., & Cheung, M. S. (2020). Supplemental Material for Fukasawa et al., 2020. <i>GSA Journals</i>. https://doi.org/10.25387/G3.11516004.V1. DOI: <a href="https://doi.org/10.25387/g3.11516004.v1" >10.25387/g3.11516004.v1</a> Handle: <a href="http://hdl.handle.net/10754/665086" >10754/665086</a></a></li></ul> | |
| dc.date.published-online | 2020-02-10 | |
| dc.date.published-print | 2020-04 |
