LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.
Online Publication Date2020-02-10
Print Publication Date2020-04
Permanent link to this recordhttp://hdl.handle.net/10754/661513
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AbstractWe propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.
CitationFukasawa, Y., Ermini, L., Wang, H., Carty, K., & Cheung, M.-S. (2020). LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data. G3: Genes|Genomes|Genetics, g3.400864.2019. doi:10.1534/g3.119.400864
SponsorsThis work was supported by Core Labs of King Abdullah University of Science and Technology.
PublisherGenetics Society of America
JournalG3 (Bethesda, Md.)