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dc.contributor.authorZaouri, Noor A.
dc.contributor.authorCui, Zhengfang
dc.contributor.authorPeinetti, Ana Sol
dc.contributor.authorLu, Yi
dc.contributor.authorHong, Pei-Ying
dc.date.accessioned2019-12-10T06:56:14Z
dc.date.available2019-12-10T06:56:14Z
dc.date.issued2019
dc.identifier.citationZaouri, N., Cui, Z., Peinetti, A. S., Lu, Y., & Hong, P.-Y. (2019). DNAzyme-based biosensor as a rapid and accurate verification tool to complement simultaneous enzyme-based media for E. coli detection. Environmental Science: Water Research & Technology, 5(12), 2260–2268. doi:10.1039/c9ew00795d
dc.identifier.doi10.1039/c9ew00795d
dc.identifier.urihttp://hdl.handle.net/10754/660496
dc.description.abstractSimultaneous enzyme-based media can be used to identify both coliforms and E. Coli faster than lactose-based fermentation protocols. However, these media can be prone to false-positive results and would require verification tests to confirm the presence of E. Coli. These verification tests (e.g. indole or oxidase tests) work based on identifying specific phenotypic traits in bacteria, and hence are also prone to inaccuracies. This study aimed to achieve rapid verification test of E. Coli using DNAzyme-based biosensor. The biosensor was first tested for four E. Coli strains against more than 90 non-E. Coli strains routinely causing false positive results and showed high specificity towards E. Coli strains. The biosensor was then determined for its detection sensitivity. It was observed that a single E. Coli colony would generate a robust fluorescence signal after 2 h of sub-culturing. With this short incubation time, non-E. Coli strains were unable to generate any apparent fluorescence signal, hence further improving the detection specificity of biosensor. Lastly, we further demonstrate that the biosensor can be applied to different commercial brands of simultaneous enzyme-based agar to consistently identify the presence of E. Coli. The biosensor was able to rapidly denote presence of discrete E. Coli colonies by binding on to protein targets possibly of DNA replication or motility functions that were predominantly specific to E. Coli.
dc.description.sponsorshipThe work was supported by KAUST Competitive Research Grant URF/1/3407-01-01 awarded to P.-Y. H. and Y. L. The authors would like to acknowledge Professor Wen-Tso Liu for gifting the E. coli and non-E. coli strains that were used in this study. The authors would also like to acknowledge Dr Ya Zhang's effort in curating and preparing the strains for shipment to KAUST.
dc.publisherRoyal Society of Chemistry (RSC)
dc.relation.urlhttp://xlink.rsc.org/?DOI=C9EW00795D
dc.relation.urlhttps://doi.org/10.1039/c9ew00795d
dc.rightsArchived with thanks to Environmental Science: Water Research and Technology
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/
dc.titleDNAzyme-based biosensor as a rapid and accurate verification tool to complement simultaneous enzyme-based media for: E. Coli detection
dc.typeArticle
dc.contributor.departmentWater Desalination and Reuse Research Center (WDRC)
dc.contributor.departmentEnvironmental Science and Engineering Program
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.identifier.journalEnvironmental Science: Water Research and Technology
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionDepartment of Chemistry, University of Illinois at Urbana-Champaign Urbana IL 61801
kaust.personZaouri, Noor A
kaust.personHong, Pei-Ying
kaust.grant.numberURF/1/3407-01-01
refterms.dateFOA2019-12-10T06:57:39Z
kaust.acknowledged.supportUnitCompetitive Research


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Archived with thanks to Environmental Science: Water Research and Technology
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