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    Updated inventory, evolutionary and expression analyses of G (PDR) type ABC transporter genes of rice.

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    Type
    Article
    Authors
    Gupta, Bidya Bhushan
    Selter, Liselotte L
    Baranwal, Vinay K
    Arora, Deepanksha
    Mishra, Sumit Kumar
    Sirohi, Parul
    Poonia, Anuj K
    Chaudhary, Reeku
    Kumar, Rahul
    Krattinger, Simon G. cc
    Chauhan, Harsh
    KAUST Department
    Biological and Environmental Sciences and Engineering (BESE) Division
    Plant Science
    Date
    2019-08-09
    Online Publication Date
    2019-08-09
    Print Publication Date
    2019-09
    Embargo End Date
    2021-08-17
    Permanent link to this record
    http://hdl.handle.net/10754/656540
    
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    Abstract
    ABC transporters constitute the largest family of transporter proteins in living organisms and divided into eight subfamilies, from A-H. ABCG members, specific to plants and fungi, belong to subfamily G. In this study, we provide updated inventory, detailed account of phylogeny, gene structure characteristics, and expression profiling during reproductive development, abiotic and biotic stresses of members of ABCG gene family in rice along with reannotation and cloning of FL-cDNA of OsABCG50/PDR23. We observed that of the 22 ABCGs/PDRs, four genes evolved as a result of gene duplication events and their expression pattern changed after duplication. Analysis of expression revealed seed and developmental stage preferential expression of five ABCG/PDR members. Transcript levels of eight ABCGs/PDRs were affected by abiotic and biotic stresses. Expression of seven ABCG/PDR genes was also altered by hormonal elicitors. The modulated expression is nicely correlated with the presence of tissue/stress specific cis-acting elements present in putative promoter region.
    Citation
    Gupta, B. B., Selter, L. L., Baranwal, V. K., Arora, D., Mishra, S. K., Sirohi, P., … Chauhan, H. (2019). Updated inventory, evolutionary and expression analyses of G (PDR) type ABC transporter genes of rice. Plant Physiology and Biochemistry, 142, 429–439. doi:10.1016/j.plaphy.2019.08.004
    Sponsors
    This study is partly supported by faculty initiation grant from IIT Roorkee. BBG and RC are thankful to CSIR and UGC respectively for fellowship. SKM and PS thank MHRD for fellowship.
    Publisher
    Elsevier BV
    Journal
    Plant physiology and biochemistry : PPB
    DOI
    10.1016/j.plaphy.2019.08.004
    Additional Links
    https://linkinghub.elsevier.com/retrieve/pii/S0981942819303109
    ae974a485f413a2113503eed53cd6c53
    10.1016/j.plaphy.2019.08.004
    Scopus Count
    Collections
    Articles; Biological and Environmental Sciences and Engineering (BESE) Division

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