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dc.contributor.authorAcinas, Silvia G.
dc.contributor.authorSánchez, Pablo
dc.contributor.authorSalazar, Guillem
dc.contributor.authorCornejo-Castillo, Francisco M.
dc.contributor.authorSebastián, Marta
dc.contributor.authorLogares, Ramiro
dc.contributor.authorSunagawa, Shinichi
dc.contributor.authorHingamp, Pascal
dc.contributor.authorOgata, Hiroyuki
dc.contributor.authorLima-Mendez, Gipsi
dc.contributor.authorRoux, Simon
dc.contributor.authorGonzález, José M.
dc.contributor.authorArrieta, Jesús M.
dc.contributor.authorAlam, Intikhab S.
dc.contributor.authorKamau, Allan
dc.contributor.authorBowler, Chris
dc.contributor.authorRaes, Jeroen
dc.contributor.authorPesant, Stéphane
dc.contributor.authorBork, Peer
dc.contributor.authorAgusti, Susana
dc.contributor.authorGojobori, Takashi
dc.contributor.authorBajic, Vladimir B.
dc.contributor.authorVaqué, Dolors
dc.contributor.authorSullivan, Matthew B.
dc.contributor.authorPedrós-Alió, Carlos
dc.contributor.authorMassana, Ramon
dc.contributor.authorDuarte, Carlos M.
dc.contributor.authorGasol, Josep M.
dc.date.accessioned2019-08-05T06:59:47Z
dc.date.available2019-08-05T06:59:47Z
dc.date.issued2019-05-14
dc.identifier.citationAcinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2019). Metabolic Architecture of the Deep Ocean Microbiome. doi:10.1101/635680
dc.identifier.doi10.1101/635680
dc.identifier.urihttp://hdl.handle.net/10754/656339
dc.description.abstractThe deep sea, the largest compartment of the ocean, is an essential component of the Earth system, but the functional exploration of its microbial communities lags far behind that of other marine realms. Here we analyze 58 bathypelagic microbial metagenomes from the Atlantic, Indian, and Pacific Oceans in an unprecedented sampling effort from the Malaspina Global Expedition, to resolve the metabolic architecture of the deep ocean microbiome. The Malaspina Deep-Sea Gene Collection, 71% of which consists of novel genes, reveals a strong dichotomy between the functional traits of free-living and particle-attached microorganisms, and shows relatively patchy composition challenging the paradigm of a uniform dark ocean ecosystem. Metagenome Assembled Genomes uncovered 11 potential new phyla, establishing references for deep ocean microbial taxa, and revealed mixotrophy to be a widespread trophic strategy in the deep ocean. These results expand our understanding of the functional diversity, metabolic versatility, and carbon cycling in the largest ecosystem on Earth.
dc.description.sponsorshipThis work was funded by the Spanish Ministry of Economy and Competitiveness (MINECO) through the Consolider-Ingenio program (Malaspina 2010 Expedition, ref. CSD2008-00077). The sequencing of 58 bathypelagic metagenomes was done by the U.S. Department of Energy Joint Genome Institute, supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02 05CH11231 to SGA. Additional funding was provided by the project MAGGY (CTM2017-87736-R) to SGA from the Spanish Ministry of Economy and Competitiveness, Grup de Recerca 2017SGR/1568 from Generalitat de Catalunya, and King Abdullah University of Science and Technology (KAUST) under contract OSR #3362. HighPerformance computing analyses were run at the Marine Bioinformatics Service (MARBITS) of the Institut de Ciències del Mar (ICM-CSIC), Barcelona Supercomputing Center (Grant BCV2013-2-0001) and KAUST's Ibex HPC. We thank the R/V Hesperides crew, the chief scientists in Malaspina legs, and all project participants for their help in making this project possible. We thank Shook Studio for assistance with figure design and execution.
dc.publisherCold Spring Harbor Laboratory
dc.relation.urlhttp://biorxiv.org/lookup/doi/10.1101/635680
dc.rightsArchived with thanks to bioRxiv
dc.titleMetabolic Architecture of the Deep Ocean Microbiome
dc.typePreprint
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentMarine Science Program
dc.contributor.departmentRed Sea Research Center (RSRC)
dc.contributor.departmentBioscience Program
dc.contributor.departmentApplied Mathematics and Computational Science Program
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
dc.eprint.versionPre-print
dc.contributor.institutionDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSIC, Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Spain.
dc.contributor.institutionDepartment of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland.
dc.contributor.institutionDepartment of Ocean Sciences, University of California, Santa Cruz, CA 95064, USA.
dc.contributor.institutionInstituto de Oceanografía y Cambio Global, IOCAG, Universidad de Las Palmas de Gran Canaria, ULPGC, 35214, Gran Canaria, Spain.
dc.contributor.institutionAix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110 , 13288, Marseille, France.
dc.contributor.institutionInstitute for Chemical Research, Kyoto University, Gokasho, Uji 611-0011, Japan
dc.contributor.institutionCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles (ULB), Belgium
dc.contributor.institutionInteruniversity Institute for Bioinformatics in Brussels, ULB-VUB, Boulevard du Triomphe CP 263, 1050 Brussels, Belgium.
dc.contributor.institutionDepartment of Microbiology, The Ohio State University, Columbus, Ohio 43210, USA.
dc.contributor.institutionDepartment of Microbiology, University of La Laguna, La Laguna, Spain.
dc.contributor.institutionSpanish Institute of Oceanography (IEO), Oceanographic Center of The Canary Islands, Dársena Pesquera, Santa Cruz de Tenerife, 38180, Spain.
dc.contributor.institutionInstitut de Biologie de l’Ecole normale supérieure, Ecole normale supérieure, CNRS, INSERM, Paris Sciences et Lettres Research University, Paris, France.
dc.contributor.institutionFR Tara Oceans GO-SEE, 75005 Paris, France.
dc.contributor.institutionDepartment of Microbiology and Immunology, Rega Institute, KU Leuven – University of Leuven, Herestraat 49, B-3000 Leuven, Belgium.
dc.contributor.institutionVIB Center for Microbiology, Herestraat 49, B-3000 Leuven, Belgium.
dc.contributor.institutionPANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, 28359 Bremen, Germany
dc.contributor.institutionMARUM, Bremen University, 28359 Bremen, Germany
dc.contributor.institutionStructural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117 Heidelberg, Germany.
dc.contributor.institutionDepartment of Microbiology and Civil Environmental and Geodetic Engineering, The Ohio State University, Columbus, Ohio 43210, USA.
dc.contributor.institutionDepartment of Systems Biology, Centro Nacional de Biotecnología (CNB), CSIC, Madrid, Spain.
dc.contributor.institutionCentre for Marine Ecosystems Research, Edith Cowan University, Joondalup, WA, Australia
kaust.personAlam, Intikhab S.
kaust.personKamau, Allan
kaust.personAgusti, Susana
kaust.personGojobori, Takashi
kaust.personBajic, Vladimir B.
kaust.personDuarte, Carlos M.
kaust.grant.numberOSR #3362
refterms.dateFOA2019-08-05T07:01:16Z
kaust.acknowledged.supportUnitIbex
kaust.acknowledged.supportUnitOSR


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