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    Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

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    Type
    Article
    Authors
    Caputi, Luigi
    Carradec, Quentin
    Eveillard, Damien
    Kirilovsky, Amos
    Pelletier, Eric
    Pierella Karlusich, Juan J.
    Rocha Jimenez Vieira, Fabio
    Villar, Emilie
    Chaffron, Samuel
    Malviya, Shruti
    Scalco, Eleonora
    Acinas, Silvia G.
    Alberti, Adriana
    Aury, Jean Marc
    Benoiston, Anne Sophie
    Bertrand, Alexis
    Biard, Tristan
    Bittner, Lucie
    Boccara, Martine
    Brum, Jennifer R.
    Brunet, Christophe
    Busseni, Greta
    Carratalà, Anna
    Claustre, Hervé
    Coelho, Luis Pedro
    Colin, Sébastien
    D'Aniello, Salvatore
    Da Silva, Corinne
    Del Core, Marianna
    Doré, Hugo
    Gasparini, Stéphane
    Kokoszka, Florian
    Jamet, Jean Louis
    Lejeusne, Christophe
    Lepoivre, Cyrille
    Lescot, Magali
    Lima-Mendez, Gipsi
    Lombard, Fabien
    Lukeš, Julius
    Maillet, Nicolas
    Madoui, Mohammed Amin
    Martinez, Elodie
    Mazzocchi, Maria Grazia
    Néou, Mario B.
    Paz-Yepes, Javier
    Poulain, Julie
    Ramondenc, Simon
    Romagnan, Jean Baptiste
    Roux, Simon
    Salvagio Manta, Daniela
    Sanges, Remo
    Speich, Sabrina
    Sprovieri, Mario
    Sunagawa, Shinichi
    Taillandier, Vincent
    Tanaka, Atsuko
    Tirichine, Leila
    Trottier, Camille
    Uitz, Julia
    Veluchamy, Alaguraj
    Veselá, Jana
    Vincent, Flora
    Yau, Sheree
    Kandels-Lewis, Stefanie
    Searson, Sarah
    Dimier, Céline
    Picheral, Marc
    Bork, Peer
    Boss, Emmanuel
    de Vargas, Colomban
    Follows, Michael J.
    Grimsley, Nigel
    Guidi, Lionel
    Hingamp, Pascal
    Karsenti, Eric
    Sordino, Paolo
    Stemmann, Lars
    Sullivan, Matthew B.
    Tagliabue, Alessandro
    Zingone, Adriana
    Garczarek, Laurence
    d'Ortenzio, Fabrizio
    Testor, Pierre
    Not, Fabrice
    d'Alcalà, Maurizio Ribera
    Wincker, Patrick
    Bowler, Chris
    Iudicone, Daniele
    KAUST Department
    Biological and Environmental Sciences and Engineering (BESE) Division
    Date
    2019-03-20
    Online Publication Date
    2019-03-20
    Print Publication Date
    2019-03
    Permanent link to this record
    http://hdl.handle.net/10754/656196
    
    Metadata
    Show full item record
    Abstract
    Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community composition, and the lack of reference gene catalogs for key taxa. Iron is a key driver of plankton dynamics and, therefore, of global biogeochemical cycles and climate. To assess the impact of iron availability on plankton communities, we explored the comprehensive bio-oceanographic and bio-omics data sets from Tara Oceans in the context of the iron products from two state-of-the-art global scale biogeochemical models. We obtained novel information about adaptation and acclimation toward iron in a range of phytoplankton, including picocyanobacteria and diatoms, and identified whole subcommunities covarying with iron. Many of the observed global patterns were recapitulated in the Marquesas archipelago, where frequent plankton blooms are believed to be caused by natural iron fertilization, although they are not captured in large-scale biogeochemical models. This work provides a proof of concept that integrative analyses, spanning from genes to ecosystems and viruses to zooplankton, can disentangle the complexity of plankton communities and can lead to more accurate formulations of resource bioavailability in biogeochemical models, thus improving our understanding of plankton resilience in a changing environment.
    Citation
    Caputi, L., Carradec, Q., Eveillard, D., Kirilovsky, A., Pelletier, E., Pierella Karlusich, J. J., … Malviya, S. (2019). Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. Global Biogeochemical Cycles, 33(3), 391–419. doi:10.1029/2018gb006022
    Sponsors
    The Tara Oceans consortium acknowledges the origin of samples from Stations TARA_113-125 as French Polynesia and that they were collected under Convention number 3534 (Convention relatif à la campagne de prélévements et de mésures de Tara Oceans en Polynesie Francaise) dated 16 June 2011. We thank the commitment of the following people and sponsors who made this singular expedition possible: CNRS (in particular Groupement de Recherche GDR3280, the Mission Pour l'Interdisciplinarité – Project MEGALODOM, and the Fédération de Recherche GO-SEE FR2022), European Molecular Biology Laboratory (EMBL), Genoscope/CEA, the French Government “Investissements d'Avenir” programs Oceanomics (ANR-11-BTBR-0008), MEMO LIFE (ANR-10-LABX-54), PSL* Research University (ANR-11-IDEX-0001-02), and FRANCE GENOMIQUE (ANR-10-INBS-09), Fund for Scientific Research – Flanders, VIB, Stazione Zoologica Anton Dohrn, UNIMIB, ANR (projects “PHYTBACK/ANR-2010-1709-01,” POSEIDON/ANR-09-BLAN-0348, PROMETHEUS/ANR-09-PCS-GENM-217, TARA-GIRUS/ANR-09-PCS-GENM-218, SAMOSA/ANR-13-ADAP-0010, CINNAMON/ANR-17-CE02-0014-01), EU FP7 (MicroB3/No. 287589), ERC Advanced Grant Award (Diatomite: 294823), the LouisD foundation of the Institut de France, a Radcliffe Institute Fellowship from Harvard University to C. B., JSPS/MEXT KAKENHI (26430184, 16H06437, and 16KT0020), The Canon Foundation (203143100025), Gordon and Betty Moore Foundation (award #3790) and the US National Science Foundation (awards OCE#1536989 and OCE#1829831) to MBS, agnès b., the Veolia Environment Foundation, Region Bretagne, World Courier, Illumina, Cap L'Orient, the EDF Foundation EDF Diversiterre, FRB, the Prince Albert II de Monaco Foundation, Etienne Bourgois, the Fonds Français pour l'Environnement Mondial, the TARA schooner and its captain and crew. Tara Oceans would not exist without continuous support from 23 institutes (http://oceans.taraexpeditions.org). This article is contribution number 85 of Tara Oceans. The authors have deposited the data in the following repositories: Sequencing data are archived at ENA (http://www.ebi.ac.uk/ena/) under the accession number PRJEB4352 for the metagenomics data and PRJEB6609 for the metatranscriptomics data (Carradec et al.,); environmental data are available at PANGAEA (https://www.pangaea.de/).
    Publisher
    American Geophysical Union (AGU)
    Journal
    Global Biogeochemical Cycles
    DOI
    10.1029/2018GB006022
    Additional Links
    https://ieeexplore.ieee.org/document/8621363/
    ae974a485f413a2113503eed53cd6c53
    10.1029/2018GB006022
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division

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