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dc.contributor.authorBougouffa, Salim
dc.contributor.authorMorton, Mitchell J. L.
dc.contributor.authorLightfoot, D. J.
dc.contributor.authorMohamad Razali, Rozaimi
dc.contributor.authorAlam, Intikhab
dc.contributor.authorEssack, Magbubah
dc.contributor.authorArold, Stefan T.
dc.contributor.authorKamau, Allan
dc.contributor.authorSchmöckel, Sandra M.
dc.contributor.authorPailles, Yveline
dc.contributor.authorShahid, Mohammed
dc.contributor.authorMichell, Craig T
dc.contributor.authorAl-Babili, Salim
dc.contributor.authorHo, Shwen
dc.contributor.authorTester, Mark A.
dc.contributor.authorBajic, Vladimir B.
dc.contributor.authorNegrão, Sónia
dc.date.accessioned2018-07-26T07:35:58Z
dc.date.available2018-07-26T07:35:58Z
dc.date.issued2016
dc.identifier.citationBougouffa, S., Morton, M. J. L., Lightfoot, D. J., Mohamad Razali, R., Alam, I., Essack, M., … Sónia, N. (2016). Dataset for ‘The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance’ [Data set]. KAUST Research Repository. https://doi.org/10.25781/KAUST-4KWTX
dc.identifier.doi10.25781/KAUST-4KWTX
dc.identifier.urihttp://hdl.handle.net/10754/628050
dc.descriptionSolanum pimpinellifolium, a wild relative of cultivated tomato, offers a wealth of breeding potential for several desirable traits such as tolerance to abiotic and biotic stresses. Here, we report the genome and annotation of S. pimpinellifolium ‘LA0480’. The ‘LA0480’ genome size (811 Mb) and the number of annotated genes (25,970) are within the range observed for other sequenced tomato species.
dc.description.sponsorshipThis publication is based upon work supported by the King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. 2302, No. 1976-02 and KAUST Base Research Funds to VBB grant No. BAS/1/1606-01-01. Genome sequencing was performed at the biological core laboratories of KAUST. All the computational analyses were performed on Dragon and Snapdragon computer clusters of the Computational Bioscience Research Center (CBRC) at King Abdullah University of Science and Technology (KAUST).
dc.publisherKAUST Research Repository
dc.relation.urlhttps://doi.org/10.1101/215517
dc.relation.urlhttp://hdl.handle.net/10754/626165
dc.rightsAttribution-NonCommercial 3.0 United States
dc.rights.urihttp://creativecommons.org/licenses/by-nc/3.0/us/
dc.subjectsolanum pimpinellifolium
dc.subjectgenome
dc.subjectplant
dc.subjectabiotic and biotic stress
dc.subjectsalt tolerance
dc.subjectWild tomato
dc.subjectgenome annotation
dc.titleDataset for "The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance"
dc.typeDataset
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentKAUST Environmental Epigenetic Program (KEEP)
dc.contributor.departmentRed Sea Research Center (RSRC)
dc.contributor.departmentApplied Mathematics and Computational Science Program
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
dc.contributor.institutionInternational Center for Biosaline Agriculture (ICBA), PO Box 14660, Dubai, United Arab Emirates
dc.contributor.institutionDepartment of Environmental and Biological Sciences, University of Eastern Finland, Yliopistokatu 7, FI-80101, Joensuu, Finland
kaust.personBajic, Vladimir B.
dc.relation.issupplementtoDOI:10.1101/215517
refterms.dateFOA2018-07-26T07:35:59Z
kaust.request.doiyes
display.relations<b>Is Supplement To:</b><br/> <ul><li><i>[Article]</i> <br/> Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, et al. (2018) The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. Frontiers in Plant Science 9. Available: http://dx.doi.org/10.3389/fpls.2018.01402.. DOI: <a href="https://doi.org/10.1101/215517" >10.1101/215517</a> Handle: <a href="http://hdl.handle.net/10754/626165" >10754/626165</a></a></li></ul>


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Predicted proteins
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s.pimp.maker.proteins.LONGEST.FINAL.faa
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predicted protein sets excluding all isoforms but the longest. This is useful for comparative analyses such OrthoMCL
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s.pimp.maker.transcripts.FINAL.noUTR.fna
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Predicted transcripts with UTRs removed
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s.pimp.maker.transcripts.FINAL.UTR.fna
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Predicted transcripts with UTRs
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s.pimp.mgm.FINAL.gt_tidy_sort.gff
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Gene model in GFF format. Evidence alignment not included
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tomato-scaffolds.abyss.77.gc.ov31.200bp.fasta.zip
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Genome assembly, Scaffolds, min length 200 bp, ABySS assembler

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