Dataset for "The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance"
Name:
s.pimp.maker.proteins.FINAL.faa
Size:
10.88Mb
Format:
Unknown
Description:
Predicted proteins
Name:
s.pimp.maker.proteins.LONGEST.FINAL.faa
Size:
10.60Mb
Format:
Unknown
Description:
predicted protein sets excluding all isoforms but the longest. This is useful for comparative analyses such OrthoMCL
Name:
s.pimp.maker.transcripts.FINAL.noUTR.fna
Size:
31.44Mb
Format:
Unknown
Description:
Predicted transcripts with UTRs removed
Type
DatasetAuthors
Bougouffa, Salim
Morton, Mitchell J. L.
Lightfoot, D. J.
Mohamad Razali, Rozaimi
Alam, Intikhab
Essack, Magbubah
Arold, Stefan T.
Kamau, Allan
Schmöckel, Sandra M.
Pailles, Yveline
Shahid, Mohammed
Michell, Craig T
Al-Babili, Salim
Ho, Shwen
Tester, Mark A.
Bajic, Vladimir B.
Negrão, Sónia
KAUST Department
Computational Bioscience Research Center (CBRC)Biological and Environmental Sciences and Engineering (BESE) Division
KAUST Environmental Epigenetic Program (KEEP)
Red Sea Research Center (RSRC)
Applied Mathematics and Computational Science Program
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Date
2016Permanent link to this record
http://hdl.handle.net/10754/628050Metadata
Show full item recordDescription
Solanum pimpinellifolium, a wild relative of cultivated tomato, offers a wealth of breeding potential for several desirable traits such as tolerance to abiotic and biotic stresses. Here, we report the genome and annotation of S. pimpinellifolium ‘LA0480’. The ‘LA0480’ genome size (811 Mb) and the number of annotated genes (25,970) are within the range observed for other sequenced tomato species.Citation
Bougouffa, S., Morton, M. J. L., Lightfoot, D. J., Mohamad Razali, R., Alam, I., Essack, M., … Sónia, N. (2016). Dataset for ‘The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance’ [Data set]. KAUST Research Repository. https://doi.org/10.25781/KAUST-4KWTXSponsors
This publication is based upon work supported by the King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. 2302, No. 1976-02 and KAUST Base Research Funds to VBB grant No. BAS/1/1606-01-01. Genome sequencing was performed at the biological core laboratories of KAUST. All the computational analyses were performed on Dragon and Snapdragon computer clusters of the Computational Bioscience Research Center (CBRC) at King Abdullah University of Science and Technology (KAUST).Publisher
KAUST Research RepositoryAdditional Links
https://doi.org/10.1101/215517http://hdl.handle.net/10754/626165
Relations
Is Supplement To:- [Article]
Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, et al. (2018) The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. Frontiers in Plant Science 9. Available: http://dx.doi.org/10.3389/fpls.2018.01402.. DOI: 10.1101/215517 Handle: 10754/626165
Scopus Count
Collections
Biological and Environmental Science and Engineering (BESE) Division; Red Sea Research Center (RSRC); Applied Mathematics and Computational Science Program; Computational Bioscience Research Center (CBRC); Datasets; Computer, Electrical and Mathematical Science and Engineering (CEMSE) DivisionThe following license files are associated with this item:
Except where otherwise noted, this item's license is described as Attribution-NonCommercial 3.0 United States