Dataset for "The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance"
predicted protein sets excluding ...
Predicted transcripts with UTRs ...
Predicted transcripts with UTRs
Gene model in GFF format. Evidence ...
Genome assembly, Scaffolds, min ...
Morton, Mitchell J. L.
Lightfoot, D. J.
Mohamad Razali, Rozaimi
Arold, Stefan T.
Schmöckel, Sandra M.
Michell, Craig T
Tester, Mark A.
Bajic, Vladimir B.
KAUST DepartmentComputational Bioscience Research Center (CBRC)
Division of Biological and Environmental Sciences and Engineering
KAUST Environmental Epigenetic Program (KEEP)
Red Sea Research Center (RSRC)
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DescriptionSolanum pimpinellifolium, a wild relative of cultivated tomato, offers a wealth of breeding potential for several desirable traits such as tolerance to abiotic and biotic stresses. Here, we report the genome and annotation of S. pimpinellifolium ‘LA0480’. The ‘LA0480’ genome size (811 Mb) and the number of annotated genes (25,970) are within the range observed for other sequenced tomato species.
CitationBougouffa, S., Morton, M. J. L., Lightfoot, D. J., Mohamad Razali, R., Alam, I., Essack, M., … Sónia, N. (2016). Dataset for ‘The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance’ [Data set]. KAUST Research Repository. https://doi.org/10.25781/KAUST-4KWTX
SponsorsThis publication is based upon work supported by the King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. 2302, No. 1976-02 and KAUST Base Research Funds to VBB grant No. BAS/1/1606-01-01. Genome sequencing was performed at the biological core laboratories of KAUST. All the computational analyses were performed on Dragon and Snapdragon computer clusters of the Computational Bioscience Research Center (CBRC) at King Abdullah University of Science and Technology (KAUST).
Is Supplement ToRazali, R., Bougouffa, S., Morton, M. J. L., Lightfoot, D. J., Alam, I., Essack, M., … Negrão, S. (2017). The genome sequence of the wild tomato Solanum pimpinellifolium provides insights into salinity tolerance. BioRxiv Preprint. doi:10.1101/215517
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