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dc.contributor.advisorGao, Xin
dc.contributor.authorHou, Siqing
dc.date.accessioned2018-05-24T05:05:26Z
dc.date.available2019-05-21T00:00:00Z
dc.date.issued2018-05-21
dc.identifier.citationHou, S. (2018). Neural Inductive Matrix Completion for Predicting Disease-Gene Associations. KAUST Research Repository. https://doi.org/10.25781/KAUST-V8ZRC
dc.identifier.doi10.25781/KAUST-V8ZRC
dc.identifier.urihttp://hdl.handle.net/10754/627946
dc.description.abstractIn silico prioritization of undiscovered associations can help find causal genes of newly discovered diseases. Some existing methods are based on known associations, and side information of diseases and genes. We exploit the possibility of using a neural network model, Neural inductive matrix completion (NIMC), in disease-gene prediction. Comparing to the state-of-the-art inductive matrix completion method, using neural networks allows us to learn latent features from non-linear functions of input features. Previous methods use disease features only from mining text. Comparing to text mining, disease ontology is a more informative way of discovering correlation of dis- eases, from which we can calculate the similarities between diseases and help increase the performance of predicting disease-gene associations. We compare the proposed method with other state-of-the-art methods for pre- dicting associated genes for diseases from the Online Mendelian Inheritance in Man (OMIM) database. Results show that both new features and the proposed NIMC model can improve the chance of recovering an unknown associated gene in the top 100 predicted genes. Best results are obtained by using both the new features and the new model. Results also show the proposed method does better in predicting associated genes for newly discovered diseases.
dc.language.isoen
dc.subjectdisease-gene predictions
dc.subjectNeural network
dc.subjectmatrix completion
dc.subjectgenetic disorders
dc.subjecthuman phenotype ontology
dc.titleNeural Inductive Matrix Completion for Predicting Disease-Gene Associations
dc.typeThesis
dc.contributor.departmentComputer, Electrical and Mathematical Science and Engineering (CEMSE) Division
dc.rights.embargodate2019-05-21
thesis.degree.grantorKing Abdullah University of Science and Technology
dc.contributor.committeememberBajic, Vladimir B.
dc.contributor.committeememberHoehndorf, Robert
thesis.degree.disciplineComputer Science
thesis.degree.nameMaster of Science
dc.rights.accessrightsAt the time of archiving, the student author of this thesis opted to temporarily restrict access to it. The full text of this thesis became available to the public after the expiration of the embargo on 2019-05-21.
refterms.dateFOA2019-05-21T00:00:00Z


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