Name:
Synthetic Biology Open Language ...
Size:
2.440Mb
Format:
PDF
Description:
Published version
Type
ArticleAuthors
Cox, Robert SidneyMadsen, Curtis
McLaughlin, James
Nguyen, Tramy
Roehner, Nicholas
Bartley, Bryan
Bhatia, Swapnil
Bissell, Mike
Clancy, Kevin
Gorochowski, Thomas
Grunberg, Raik
Luna, Augustin
Le Novère, Nicolas
Pocock, Matthew
Sauro, Herbert
Sexton, John T.
Stan, Guy-Bart
Tabor, Jeffrey J.
Voigt, Christopher A.
Zundel, Zach
Myers, Chris
Beal, Jacob
Wipat, Anil
Date
2018-03-24Permanent link to this record
http://hdl.handle.net/10754/627544
Metadata
Show full item recordAbstract
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species. Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.0 of SBOL Visual, which builds on the prior SBOL Visual 1.0 standard by expanding diagram syntax to include functional interactions and molecular species, making the relationship between diagrams and the SBOL data model explicit, supporting families of symbol variants, clarifying a number of requirements and best practices, and significantly expanding the collection of diagram glyphs.Citation
Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, et al. (2018) Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. Journal of Integrative Bioinformatics 0. Available: http://dx.doi.org/10.1515/jib-2017-0074.Publisher
Walter de Gruyter GmbHISSN
1613-4516PubMed ID
29549707Additional Links
https://www.degruyter.com/view/j/jib.ahead-of-print/jib-2017-0074/jib-2017-0074.xmlae974a485f413a2113503eed53cd6c53
10.1515/jib-2017-0074
Scopus Count
Except where otherwise noted, this item's license is described as This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0
Related articles
- Synthetic Biology Open Language (SBOL) Version 2.0.0.
- Authors: Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H
- Issue date: 2015 Sep 4
- Synthetic Biology Open Language (SBOL) Version 2.2.0.
- Authors: Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari JH, Myers C, Sauro H, Wipat A
- Issue date: 2018 Apr 2
- Proposed data model for the next version of the synthetic biology open language.
- Authors: Roehner N, Oberortner E, Pocock M, Beal J, Clancy K, Madsen C, Misirli G, Wipat A, Sauro H, Myers CJ
- Issue date: 2015 Jan 16
- Synthetic Biology Open Language (SBOL) Version 2.1.0.
- Authors: Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari J, Myers C, Sauro H, Wipat A
- Issue date: 2016 Dec 18
- A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language.
- Authors: Nguyen T, Roehner N, Zundel Z, Myers CJ
- Issue date: 2016 Jun 17