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dc.contributor.authorSalhi, Adil
dc.contributor.authorNegrão, Sónia
dc.contributor.authorEssack, Magbubah
dc.contributor.authorMorton, Mitchell J. L.
dc.contributor.authorBougouffa, Salim
dc.contributor.authorMohamad Razali, Rozaimi
dc.contributor.authorRadovanovic, Aleksandar
dc.contributor.authorMarchand, Benoit
dc.contributor.authorKulmanov, Maxat
dc.contributor.authorHoehndorf, Robert
dc.contributor.authorTester, Mark A.
dc.contributor.authorBajic, Vladimir B.
dc.date.accessioned2017-07-26T06:19:09Z
dc.date.available2017-07-26T06:19:09Z
dc.date.issued2017-07-20
dc.identifier.citationSalhi A, Negrão S, Essack M, Morton MJL, Bougouffa S, et al. (2017) DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. Scientific Reports 7. Available: http://dx.doi.org/10.1038/s41598-017-05448-0.
dc.identifier.issn2045-2322
dc.identifier.pmid28729549
dc.identifier.doi10.1038/s41598-017-05448-0
dc.identifier.urihttp://hdl.handle.net/10754/625248
dc.description.abstractTomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of tomato-related research and published literature. We developed DES-TOMATO knowledgebase (KB) for exploration of information related to tomato. Information exploration is enabled through terms from 26 dictionaries and combination of these terms. To illustrate the utility of DES-TOMATO, we provide several examples how one can efficiently use this KB to retrieve known or potentially novel information. DES-TOMATO is free for academic and nonprofit users and can be accessed at http://cbrc.kaust.edu.sa/des_tomato/, using any of the mainstream web browsers, including Firefox, Safari and Chrome.
dc.description.sponsorshipThe computational analysis for this study was performed on Dragon and Snapdragon compute clusters of the Computational Bioscience Research Center (CBRC) at King Abdullah University of Science and Technology (KAUST). This work has been supported by the King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Awards No URF/1/2302 and No URF/1/1976-02, and KAUST Base Research Fund (BAS/1/1606-01-01) to VBB.
dc.publisherSpringer Nature
dc.relation.urlhttps://www.nature.com/articles/s41598-017-05448-0
dc.rightsThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.titleDES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
dc.typeArticle
dc.contributor.departmentApplied Mathematics and Computational Science Program
dc.contributor.departmentBio-Ontology Research Group (BORG)
dc.contributor.departmentBiological and Environmental Science and Engineering (BESE) Division
dc.contributor.departmentCenter for Desert Agriculture
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.contributor.departmentComputer Science Program
dc.contributor.departmentComputer, Electrical and Mathematical Science and Engineering (CEMSE) Division
dc.contributor.departmentPlant Science
dc.contributor.departmentThe Salt Lab
dc.identifier.journalScientific Reports
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionNew York University, Abu Dhabi, UAE.
kaust.personSalhi, Adil
kaust.personNegrão, Sónia
kaust.personEssack, Magbubah
kaust.personMorton, Mitchell J. L.
kaust.personBougouffa, Salim
kaust.personMohamad Razali, Rozaimi
kaust.personRadovanovic, Aleksandar
kaust.personKulmanov, Maxat
kaust.personHoehndorf, Robert
kaust.personTester, Mark A.
kaust.personBajic, Vladimir B.
refterms.dateFOA2018-06-13T10:49:34Z
dc.date.published-online2017-07-20
dc.date.published-print2017-12


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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
Except where otherwise noted, this item's license is described as This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.