Supplementary Material for: Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
Type
DatasetAuthors
Chandramouli, Kondethimmanahalli
Al-Aqeel, Sarah

Ryu, Tae Woo
Zhang, Huoming

Seridi, Loqmane

Ghosheh, Yanal

Qian, Pei-Yuan

Ravasi, Timothy

KAUST Department
Biological and Environmental Sciences and Engineering (BESE) DivisionBioscience Core Lab
Bioscience Program
Chemical Engineering Program
Computer Science Program
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Integrative Systems Biology Lab
Physical Science and Engineering (PSE) Division
Date
2015Permanent link to this record
http://hdl.handle.net/10754/624137
Metadata
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Abstract Background The barnacle Balanus amphitrite is widely distributed in marine shallow and tidal waters, and has significant economic and ecological importance. Nauplii, the first larval stage of most crustaceans, are extremely abundant in the marine zooplankton. However, a lack of genome information has hindered elucidation of the molecular mechanisms of development, settlement and survival strategies in extreme marine environments. We sequenced and constructed the genome dataset for nauplii to obtain comprehensive larval genetic information. We also investigated iTRAQ-based protein expression patterns to reveal the molecular basis of nauplii development, and to gain information on larval survival strategies in the Red Sea marine environment. Results A nauplii larval transcript dataset, containing 92,117 predicted open reading frames (ORFs), was constructed and used as a reference for the proteome analysis. Genes related to translation, oxidative phosphorylation and cytoskeletal development were highly abundant. We observed remarkable plasticity in the proteome of Red Sea larvae. The proteins associated with development, stress responses and osmoregulation showed the most significant differences between the two larval populations studied. The synergistic overexpression of heat shock and osmoregulatory proteins may facilitate larval survival in intertidal habitats or in extreme environments. Conclusions We presented, for the first time, comprehensive transcriptome and proteome datasets for Red Sea nauplii. The datasets provide a foundation for future investigations focused on the survival mechanisms of other crustaceans in extreme marine environments.Citation
Kondethimmanahalli Chandramouli, Al-Aqeel, S., Taewoo Ryu, Huoming Zhang, Loqmane Seridi, Yanal Ghosheh, … Ravasi, T. (2015). Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea. Figshare. https://doi.org/10.6084/m9.figshare.c.3629591Publisher
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Is Supplement To:- [Article]
Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea 2015, 16 (1) BMC Genomics. DOI: 10.1186/s12864-015-2262-1 HANDLE: 10754/584004
ae974a485f413a2113503eed53cd6c53
10.6084/m9.figshare.c.3629591