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    Hybrid Multilevel Monte Carlo Simulation of Stochastic Reaction Networks

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    Type
    Presentation
    Authors
    Moraes, Alvaro cc
    KAUST Department
    Applied Mathematics and Computational Science Program
    Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
    Date
    2015-01-07
    Permanent link to this record
    http://hdl.handle.net/10754/624109
    
    Metadata
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    Abstract
    Stochastic reaction networks (SRNs) is a class of continuous-time Markov chains intended to describe, from the kinetic point of view, the time-evolution of chemical systems in which molecules of different chemical species undergo a finite set of reaction channels. This talk is based on articles [4, 5, 6], where we are interested in the following problem: given a SRN, X, defined though its set of reaction channels, and its initial state, x0, estimate E (g(X(T))); that is, the expected value of a scalar observable, g, of the process, X, at a fixed time, T. This problem lead us to define a series of Monte Carlo estimators, M, such that, with high probability can produce values close to the quantity of interest, E (g(X(T))). More specifically, given a user-selected tolerance, TOL, and a small confidence level, η, find an estimator, M, based on approximate sampled paths of X, such that, P (|E (g(X(T))) − M| ≤ TOL) ≥ 1 − η; even more, we want to achieve this objective with near optimal computational work. We first introduce a hybrid path-simulation scheme based on the well-known stochastic simulation algorithm (SSA)[3] and the tau-leap method [2]. Then, we introduce a Multilevel Monte Carlo strategy that allows us to achieve a computational complexity of order O(T OL−2), this is the same computational complexity as in an exact method but with a smaller constant. We provide numerical examples to show our results.
    Conference/Event name
    Advances in Uncertainty Quantification Methods, Algorithms and Applications (UQAW 2015)
    Additional Links
    http://mediasite.kaust.edu.sa/Mediasite/Play/869e9e5ed1424f18ac2ca76f04709c421d?catalog=ca65101c-a4eb-4057-9444-45f799bd9c52
    Collections
    Applied Mathematics and Computational Science Program; Presentations; Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division; Conference on Advances in Uncertainty Quantification Methods, Algorithms and Applications (UQAW 2015)

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