Empirical phylogenies and species abundance distributions are consistent with pre-equilibrium dynamics of neutral community models with gene flow
KAUST DepartmentBiological and Environmental Sciences and Engineering (BESE) Division
Integrative Systems Biology Lab
Online Publication Date2017-05-04
Print Publication Date2017-05
Permanent link to this recordhttp://hdl.handle.net/10754/623082
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AbstractCommunity characteristics reflect past ecological and evolutionary dynamics. Here, we investigate whether it is possible to obtain realistically shaped modelled communities - i.e., with phylogenetic trees and species abundance distributions shaped similarly to typical empirical bird and mammal communities - from neutral community models. To test the effect of gene flow, we contrasted two spatially explicit individual-based neutral models: one with protracted speciation, delayed by gene flow, and one with point mutation speciation, unaffected by gene flow. The former produced more realistic communities (shape of phylogenetic tree and species-abundance distribution), consistent with gene flow being a key process in macro-evolutionary dynamics. Earlier models struggled to capture the empirically observed branching tempo in phylogenetic trees, as measured by the gamma statistic. We show that the low gamma values typical of empirical trees can be obtained in models with protracted speciation, in pre-equilibrium communities developing from an initially abundant and widespread species. This was even more so in communities sampled incompletely, particularly if the unknown species are the youngest. Overall, our results demonstrate that the characteristics of empirical communities that we have studied can, to a large extent, be explained through a purely neutral model under pre-equilibrium conditions. This article is protected by copyright. All rights reserved.
CitationBonnet-Lebrun A-S, Manica A, Eriksson A, Rodrigues ASL (2017) Empirical phylogenies and species abundance distributions are consistent with pre-equilibrium dynamics of neutral community models with gene flow. Evolution. Available: http://dx.doi.org/10.1111/evo.13228.
SponsorsWe are grateful to F. Laroche and F. Jabot for very constructive discussions and to O. Gimenez for technical support. We also thank J. Rosindell, A. Hurlbert and two other (anonymous) referees for constructive comments that much contributed to improving the manuscript.
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Bonnet-Lebrun, A.-S., Manica, A., Eriksson, A., Rodrigues, A. S. L., & Rodrigues, A. S. L. (2017). Data from: Empirical phylogenies and species abundance distributions are consistent with pre-equilibrium dynamics of neutral community models with gene flow (Version 1) [Data set]. Dryad. https://doi.org/10.5061/DRYAD.98283. DOI: 10.5061/dryad.98283 Handle: 10754/663711