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    Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery

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    Type
    Article
    Authors
    Rungrat, Tepsuda
    Awlia,Mariam
    Brown, Tim
    Cheng, Riyan
    Sirault, Xavier
    Fajkus, Jiri
    Trtilek, Martin
    Furbank, Bob
    Badger, Murray
    Tester, Mark A. cc
    Pogson, Barry J
    Borevitz, Justin O
    Wilson, Pip
    KAUST Department
    Biological and Environmental Science and Engineering (BESE) Division
    Center for Desert Agriculture
    Plant Science
    Plant Science Program
    The Salt Lab
    Date
    2016-09-09
    Online Publication Date
    2016-09-09
    Print Publication Date
    2016-01
    Permanent link to this record
    http://hdl.handle.net/10754/622915
    
    Metadata
    Show full item record
    Abstract
    Monitoring the photosynthetic performance of plants is a major key to understanding how plants adapt to their growth conditions. Stress tolerance traits have a high genetic complexity as plants are constantly, and unavoidably, exposed to numerous stress factors, which limits their growth rates in the natural environment. Arabidopsis thaliana, with its broad genetic diversity and wide climatic range, has been shown to successfully adapt to stressful conditions to ensure the completion of its life cycle. As a result, A. thaliana has become a robust and renowned plant model system for studying natural variation and conducting gene discovery studies. Genome wide association studies (GWAS) in restructured populations combining natural and recombinant lines is a particularly effective way to identify the genetic basis of complex traits. As most abiotic stresses affect photosynthetic activity, chlorophyll fluorescence measurements are a potential phenotyping technique for monitoring plant performance under stress conditions. This review focuses on the use of chlorophyll fluorescence as a tool to study genetic variation underlying the stress tolerance responses to abiotic stress in A. thaliana.
    Citation
    Rungrat T, Awlia M, Brown T, Cheng R, Sirault X, et al. (2016) Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery. The Arabidopsis Book 14: e0185. Available: http://dx.doi.org/10.1199/tab.0185.
    Sponsors
    This review was supported by grants from the ARC centre of excellence in Plant Energy Biology and the Australian National University for TR, PW, JO, RF, as well as funding from King Abdullah University of Science and Technology (KAUST) for MA and MT.
    Publisher
    BioOne
    Journal
    The Arabidopsis Book
    DOI
    10.1199/tab.0185
    Additional Links
    http://www.bioone.org/doi/10.1199/tab.0185
    ae974a485f413a2113503eed53cd6c53
    10.1199/tab.0185
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division; Plant Science Program; Center for Desert Agriculture

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