Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics
Saenz Agudelo, Pablo
Piatek, Marek J.
Berumen, Michael L.
KAUST DepartmentBiological and Environmental Sciences and Engineering (BESE) Division
Red Sea Research Center (RSRC)
Computational Bioscience Research Center (CBRC)
KAUST Grant NumberCRG-1-2012-BER-002
Permanent link to this recordhttp://hdl.handle.net/10754/622537
MetadataShow full item record
AbstractButterflyfish are among the most iconic of the coral reef fishes and represent a model system to study general questions of biogeography, evolution and population genetics. We assembled and annotated the genome sequence of the blacktail butterflyfish (Chaetodon austriacus), an Arabian region endemic species that is reliant on coral reefs for food and shelter. Using available bony fish (superclass Osteichthyes) genomes as a reference, a total of 28 926 high-quality protein-coding genes were predicted from 13 967 assembled scaffolds. The quality and completeness of the draft genome of C. austriacus suggest that it has the potential to serve as a resource for studies on the co-evolution of reef fish adaptations to the unique Red Sea environment, as well as a comparison of gene sequences between closely related congeneric species of butterflyfish distributed more broadly across the tropical Indo-Pacific. © 2016 John Wiley & Sons Ltd.
CitationDiBattista JD, Wang X, Saenz-Agudelo P, Piatek MJ, Aranda M, et al. (2016) Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics. Molecular Ecology Resources. Available: http://dx.doi.org/10.1111/1755-0998.12588.
SponsorsThis research was supported by the KAUST Office of Competitive Research Funds (OCRF) under Award No. CRG-1-2012-BER-002 and Baseline Research Funds to M.L.B., as well as a National Geographic Society Grant 9024-11 to J.D.D. For logistic support, we thank Eric Mason at Dream Divers in Saudi Arabia and the KAUST Coastal and Marine Resources Core Lab including Amr Gusti. We also acknowledge important contributions from Luiz Rocha and David Catania for assistance with specimen archiving at the California Academy of Sciences; Yi Jin Liew for providing essential scripts for annotation and species classification as well as provisioning the genome browser; the KAUST Bioscience Core Laboratory with Sivakumar Neelamegam and Hicham Mansour for their assistance with library prep and Illumina sequencing; and Genotypic Technology Pvt. Ltd. with Dinesh Velayutham, Vinay Pantulwar and Subashini for their assistance with library prep, Illumina sequencing, genome assembly and genome annotation. J.D.D. and M.L.B. conceived and designed the genome study. J.D.D., P.S.-S. and M.J.P. analysed the data. X.W. and M.A. validated, annotated and analysed the genome. All authors developed the manuscript and approve of the final manuscript.
JournalMolecular Ecology Resources
- Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fish.
- Authors: DiBattista JD, Saenz-Agudelo P, Piatek MJ, Wang X, Aranda M, Berumen ML
- Issue date: 2017 Nov
- Food selection of a corallivorous butterflyfish Chaetodon austriacus in the Red Sea, with particular emphasis on size and fish symbionts of corals.
- Authors: Niedermüller SK, Schiemer LS, Herler J
- Issue date: 2009 Oct
- First draft genome of an iconic clownfish species (Amphiprion frenatus).
- Authors: Marcionetti A, Rossier V, Bertrand JAM, Litsios G, Salamin N
- Issue date: 2018 Feb 17
- The biogeography of tropical reef fishes: endemism and provinciality through time.
- Authors: Cowman PF, Parravicini V, Kulbicki M, Floeter SR
- Issue date: 2017 Nov
- Ice ages and butterflyfishes: Phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot.
- Authors: DiBattista JD, Alfaro ME, Sorenson L, Choat JH, Hobbs JA, Sinclair-Taylor TH, Rocha LA, Chang J, Luiz OJ, Cowman PF, Friedman M, Berumen ML
- Issue date: 2018 Nov