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    Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics

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    Type
    Article
    Authors
    DiBattista, Joseph cc
    Wang, Xin
    Saenz Agudelo, Pablo
    Piatek, Marek J. cc
    Aranda, Manuel cc
    Berumen, Michael L. cc
    KAUST Department
    Biological and Environmental Sciences and Engineering (BESE) Division
    Bioscience Program
    Computational Bioscience Research Center (CBRC)
    Marine Science Program
    Red Sea Research Center (RSRC)
    KAUST Grant Number
    CRG-1-2012-BER-002
    Date
    2016-08-29
    Online Publication Date
    2016-08-29
    Print Publication Date
    2018-03
    Permanent link to this record
    http://hdl.handle.net/10754/622537
    
    Metadata
    Show full item record
    Abstract
    Butterflyfish are among the most iconic of the coral reef fishes and represent a model system to study general questions of biogeography, evolution and population genetics. We assembled and annotated the genome sequence of the blacktail butterflyfish (Chaetodon austriacus), an Arabian region endemic species that is reliant on coral reefs for food and shelter. Using available bony fish (superclass Osteichthyes) genomes as a reference, a total of 28 926 high-quality protein-coding genes were predicted from 13 967 assembled scaffolds. The quality and completeness of the draft genome of C. austriacus suggest that it has the potential to serve as a resource for studies on the co-evolution of reef fish adaptations to the unique Red Sea environment, as well as a comparison of gene sequences between closely related congeneric species of butterflyfish distributed more broadly across the tropical Indo-Pacific. © 2016 John Wiley & Sons Ltd.
    Citation
    DiBattista JD, Wang X, Saenz-Agudelo P, Piatek MJ, Aranda M, et al. (2016) Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics. Molecular Ecology Resources. Available: http://dx.doi.org/10.1111/1755-0998.12588.
    Sponsors
    This research was supported by the KAUST Office of Competitive Research Funds (OCRF) under Award No. CRG-1-2012-BER-002 and Baseline Research Funds to M.L.B., as well as a National Geographic Society Grant 9024-11 to J.D.D. For logistic support, we thank Eric Mason at Dream Divers in Saudi Arabia and the KAUST Coastal and Marine Resources Core Lab including Amr Gusti. We also acknowledge important contributions from Luiz Rocha and David Catania for assistance with specimen archiving at the California Academy of Sciences; Yi Jin Liew for providing essential scripts for annotation and species classification as well as provisioning the genome browser; the KAUST Bioscience Core Laboratory with Sivakumar Neelamegam and Hicham Mansour for their assistance with library prep and Illumina sequencing; and Genotypic Technology Pvt. Ltd. with Dinesh Velayutham, Vinay Pantulwar and Subashini for their assistance with library prep, Illumina sequencing, genome assembly and genome annotation. J.D.D. and M.L.B. conceived and designed the genome study. J.D.D., P.S.-S. and M.J.P. analysed the data. X.W. and M.A. validated, annotated and analysed the genome. All authors developed the manuscript and approve of the final manuscript.
    Publisher
    Wiley
    Journal
    Molecular Ecology Resources
    DOI
    10.1111/1755-0998.12588
    PubMed ID
    27488138
    Additional Links
    http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12588/full
    ae974a485f413a2113503eed53cd6c53
    10.1111/1755-0998.12588
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division; Red Sea Research Center (RSRC); Bioscience Program; Marine Science Program; Computational Bioscience Research Center (CBRC); Reef Genomics, part of the Global Ocean Genome Project

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