Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
Liew, Yi Jin
Wilson, M. C.
Bajic, Vladimir B.
Ryu, Tae Woo
LaJeunesse, T. C.
Voolstra, Christian R.
KAUST DepartmentBiological and Environmental Sciences and Engineering (BESE) Division
Red Sea Research Center (RSRC)
Computational Bioscience Research Center (CBRC)
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
KAUST Environmental Epigenetics Research Program (KEEP)
Marine Science Program
Materials Science and Engineering Program
Computer Science Program
Applied Mathematics and Computational Science Program
Online Publication Date2016-12-22
Print Publication Date2016-12
Permanent link to this recordhttp://hdl.handle.net/10754/622071
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AbstractDespite half a century of research, the biology of dinoflagellates remains enigmatic: they defy many functional and genetic traits attributed to typical eukaryotic cells. Genomic approaches to study dinoflagellates are often stymied due to their large, multi-gigabase genomes. Members of the genus Symbiodinium are photosynthetic endosymbionts of stony corals that provide the foundation of coral reef ecosystems. Their smaller genome sizes provide an opportunity to interrogate evolution and functionality of dinoflagellate genomes and endosymbiosis. We sequenced the genome of the ancestral Symbiodinium microadriaticum and compared it to the genomes of the more derived Symbiodinium minutum and Symbiodinium kawagutii and eukaryote model systems as well as transcriptomes from other dinoflagellates. Comparative analyses of genome and transcriptome protein sets show that all dinoflagellates, not only Symbiodinium, possess significantly more transmembrane transporters involved in the exchange of amino acids, lipids, and glycerol than other eukaryotes. Importantly, we find that only Symbiodinium harbor an extensive transporter repertoire associated with the provisioning of carbon and nitrogen. Analyses of these transporters show species-specific expansions, which provides a genomic basis to explain differential compatibilities to an array of hosts and environments, and highlights the putative importance of gene duplications as an evolutionary mechanism in dinoflagellates and Symbiodinium.
CitationAranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, et al. (2016) Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Scientific Reports 6: 39734. Available: http://dx.doi.org/10.1038/srep39734.
SponsorsWe thank Matt E. Oates and Julian Gough for protein set annotation to Superfamily, and Adrian C. Carr for preliminary genome assembly. Research reported in this publication was supported by the King Abdullah University of Science and Technology (KAUST) and by an AEA2 grant to V.B.B., G.M., T.R., and C.R.V.
CollectionsArticles; Biological and Environmental Science and Engineering (BESE) Division; Red Sea Research Center (RSRC); Bioscience Program; Marine Science Program; Applied Mathematics and Computational Science Program; Computer Science Program; Material Science and Engineering Program; Computational Bioscience Research Center (CBRC); Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division; Reef Genomics, part of the Global Ocean Genome Project
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