AuthorsFisher, Hannah M.
Bazelato, Bruno S.
Dadras, Soheil S.
King, Lloyd E.
Gkoutos, Georgios V.
Sundberg, John P.
Schofield, Paul N.
KAUST DepartmentBio-Ontology Research Group (BORG)
Computational Bioscience Research Center (CBRC)
Computer Science Program
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Online Publication Date2016-06-13
Print Publication Date2016-12
Permanent link to this recordhttp://hdl.handle.net/10754/614411
MetadataShow full item record
AbstractBackground There have been repeated initiatives to produce standard nosologies and terminologies for cutaneous disease, some dedicated to the domain and some part of bigger terminologies such as ICD-10. Recently, formally structured terminologies, ontologies, have been widely developed in many areas of biomedical research. Primarily, these address the aim of providing comprehensive working terminologies for domains of knowledge, but because of the knowledge contained in the relationships between terms they can also be used computationally for many purposes. Results We have developed an ontology of cutaneous disease, constructed manually by domain experts. With more than 3000 terms, DermO represents the most comprehensive formal dermatological disease terminology available. The disease entities are categorized in 20 upper level terms, which use a variety of features such as anatomical location, heritability, affected cell or tissue type, or etiology, as the features for classification, in line with professional practice and nosology in dermatology. Available in OBO flatfile and OWL 2 formats, it is integrated semantically with other ontologies and terminologies describing diseases and phenotypes. We demonstrate the application of DermO to text mining the biomedical literature and in the creation of a network describing the phenotypic relationships between cutaneous diseases. Conclusions DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders. We envision that in the future it may be applied to the creation and mining of electronic health records, clinical training and basic research, as it supports automated inference and reasoning, and for the broader integration of skin disease information with that from other domains.
CitationDermO; an ontology for the description of dermatologic disease 2016, 7 (1) Journal of Biomedical Semantics
SponsorsThe authors acknowledge National Institutes of Health Grants R21-AR063781 to JPS and SSD, and R01HG004838-03 supported PNS and GVG. We thank Prof. Jonathan Bard for helpful comments on the manuscript and Prof. Amanda Oakley, for the support of DermNet NZ.
JournalJournal of Biomedical Semantics
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