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    miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria

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    Type
    Article
    Authors
    Liew, Yi Jin cc
    Ryu, Tae Woo
    Aranda, Manuel cc
    Ravasi, Timothy cc
    KAUST Department
    Red Sea Research Center (RSRC)
    Biological and Environmental Sciences and Engineering (BESE) Division
    Computational Bioscience Research Center (CBRC)
    Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
    Marine Science Program
    Bioscience Program
    KAUST Environmental Epigenetics Research Program (KEEP)
    Date
    2016-02-12
    Permanent link to this record
    http://hdl.handle.net/10754/600684
    
    Metadata
    Show full item record
    Abstract
    MicroRNAs (miRNAs) are small regulatory RNAs that are involved in many biological process in eukaryotes. They play a crucial role in modulating genetic expression of their targets, which makes them integral components of transcriptional regulatory networks. As sponges (phylum Porifera) are commonly considered the most basal metazoan, the in-depth capture of miRNAs from these organisms provides additional clues to the evolution of miRNA families in metazoans. Here, we identified the core proteins involved in the biogenesis of miRNAs, and obtained evidence for bona fide miRNA sequences for two marine sponges Stylissa carteri and Xestospongia testudinaria (11 and 19 respectively). Our analysis identified several miRNAs that are conserved amongst demosponges, and revealed that all of the novel miRNAs identified in these two species are specific to the class Demospongiae.
    Citation
    miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria 2016, 11 (2):e0149080 PLOS ONE
    Sponsors
    We thank Annika Haywood, Feras Lafi and Holly Bream for extracting the RNA used for sequencing, as well as two anonymous reviewers for their invaluable suggestions. This project was supported by the King Abdullah University of Science and Technology (KAUST).
    Publisher
    Public Library of Science (PLoS)
    Journal
    PLoS ONE
    DOI
    10.1371/journal.pone.0149080
    PubMed ID
    26871907
    Additional Links
    http://dx.plos.org/10.1371/journal.pone.0149080
    ae974a485f413a2113503eed53cd6c53
    10.1371/journal.pone.0149080
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division; Red Sea Research Center (RSRC); Bioscience Program; Marine Science Program; Computational Bioscience Research Center (CBRC); Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division

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