Hologenome analysis of two marine sponges with different microbiomes
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ArticleAuthors
Ryu, Tae WooSeridi, Loqmane
Moitinho-Silva, Lucas
Oates, Matthew
Liew, Yi Jin
Mavromatis, Charalampos Harris
Wang, Xiaolei
Haywood, Annika
Lafi, Feras Fawzi
Kupresanin, Marija
Sougrat, Rachid
Alzahrani, Majed A.
Giles, Emily
Ghosheh, Yanal
Schunter, Celia Marei
Baumgarten, Sebastian
Berumen, Michael L.
Gao, Xin
Aranda, Manuel
Foret, Sylvain
Gough, Julian
Voolstra, Christian R.
Hentschel, Ute
Ravasi, Timothy
KAUST Department
Biological and Environmental Science and Engineering (BESE) DivisionBioscience Program
Center for Desert Agriculture
Computational Bioscience Research Center (CBRC)
Computer Science Program
Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division
Electron Microscopy
Imaging and Characterization Core Lab
Integrative Systems Biology Lab
KAUST Environmental Epigenetic Program (KEEP)
Marine Science Program
Red Sea Research Center (RSRC)
Reef Ecology Lab
Reef Genomics Lab
Research Relations
Structural and Functional Bioinformatics Group
Date
2016-02-29Online Publication Date
2016-02-29Print Publication Date
2016-12Permanent link to this record
http://hdl.handle.net/10754/600476Metadata
Show full item recordAbstract
Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.Citation
Hologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC GenomicsSponsors
This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.Publisher
Springer NatureJournal
BMC GenomicsPubMed ID
26926518Additional Links
http://www.biomedcentral.com/1471-2164/17/158Relations
Is Supplemented By:- [Dataset]
Taewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026. DOI: 10.6084/m9.figshare.c.3597026 HANDLE: 10754/624127