Hologenome analysis of two marine sponges with different microbiomes
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ArticleAuthors
Ryu, Tae WooSeridi, Loqmane
Moitinho-Silva, Lucas
Oates, Matthew
Liew, Yi Jin
Mavromatis, Charalampos Harris
Wang, Xiaolei
Haywood, Annika
Lafi, Feras Fawzi
Kupresanin, Marija
Sougrat, Rachid
Alzahrani, Majed A.
Giles, Emily
Ghosheh, Yanal
Schunter, Celia Marei
Baumgarten, Sebastian
Berumen, Michael L.
Gao, Xin
Aranda, Manuel
Foret, Sylvain
Gough, Julian
Voolstra, Christian R.
Hentschel, Ute
Ravasi, Timothy
KAUST Department
KAUST Environmental Epigenetic Program (KEEP)Biological and Environmental Sciences and Engineering (BESE) Division
Red Sea Research Center (RSRC)
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Computational Bioscience Research Center (CBRC)
Center for Desert Agriculture
Imaging and Characterization Core Lab
Date
2016-02-29Metadata
Show full item recordAbstract
Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.Citation
Hologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC GenomicsSponsors
This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.Publisher
Springer Science + Business MediaJournal
BMC GenomicsISSN
1471-2164PubMed ID
26926518Handle URI
http://hdl.handle.net/10754/600476Is Supplemented By
Taewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026DOI:10.6084/m9.figshare.c.3597026
HANDLE:http://hdl.handle.net/10754/624127