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    Hologenome analysis of two marine sponges with different microbiomes

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    Type
    Article
    Authors
    Ryu, Tae Woo
    Seridi, Loqmane cc
    Moitinho-Silva, Lucas
    Oates, Matthew
    Liew, Yi Jin cc
    Mavromatis, Charalampos Harris cc
    Wang, Xiaolei
    Haywood, Annika
    Lafi, Feras Fawzi
    Kupresanin, Marija
    Sougrat, Rachid cc
    Alzahrani, Majed A. cc
    Giles, Emily
    Ghosheh, Yanal cc
    Schunter, Celia Marei cc
    Baumgarten, Sebastian cc
    Berumen, Michael L. cc
    Gao, Xin cc
    Aranda, Manuel cc
    Foret, Sylvain cc
    Gough, Julian
    Voolstra, Christian R. cc
    Hentschel, Ute cc
    Ravasi, Timothy cc
    KAUST Department
    Biological and Environmental Science and Engineering (BESE) Division
    Bioscience Program
    Center for Desert Agriculture
    Computational Bioscience Research Center (CBRC)
    Computer Science Program
    Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division
    Electron Microscopy
    Imaging and Characterization Core Lab
    Integrative Systems Biology Lab
    KAUST Environmental Epigenetic Program (KEEP)
    Marine Science Program
    Red Sea Research Center (RSRC)
    Reef Ecology Lab
    Reef Genomics Lab
    Research Relations
    Structural and Functional Bioinformatics Group
    Date
    2016-02-29
    Online Publication Date
    2016-02-29
    Print Publication Date
    2016-12
    Permanent link to this record
    http://hdl.handle.net/10754/600476
    
    Metadata
    Show full item record
    Abstract
    Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.
    Citation
    Hologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC Genomics
    Sponsors
    This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.
    Publisher
    Springer Nature
    Journal
    BMC Genomics
    DOI
    10.1186/s12864-016-2501-0
    PubMed ID
    26926518
    Additional Links
    http://www.biomedcentral.com/1471-2164/17/158
    Relations
    Is Supplemented By:
    • [Dataset]
      Taewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026. DOI: 10.6084/m9.figshare.c.3597026 HANDLE: 10754/624127
    ae974a485f413a2113503eed53cd6c53
    10.1186/s12864-016-2501-0
    Scopus Count
    Collections
    Articles; Biological and Environmental Science and Engineering (BESE) Division; Red Sea Research Center (RSRC); Bioscience Program; Marine Science Program; Imaging and Characterization Core Lab; Structural and Functional Bioinformatics Group; Integrative Systems Biology Lab; Computer Science Program; Computational Bioscience Research Center (CBRC); Center for Desert Agriculture; Computer, Electrical and Mathematical Science and Engineering (CEMSE) Division; Reef Genomics, part of the Global Ocean Genome Project

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