Hologenome analysis of two marine sponges with different microbiomes
Microsoft Excel 2007
Microsoft Excel 2007
Microsoft Excel 2007
AuthorsRyu, Tae Woo
Liew, Yi Jin
Mavromatis, Charalampos Harris
Lafi, Feras Fawzi
Alzahrani, Majed A.
Schunter, Celia Marei
Berumen, Michael L.
Voolstra, Christian R.
KAUST DepartmentKAUST Environmental Epigenetic Program (KEEP)
Biological and Environmental Sciences and Engineering (BESE) Division
Red Sea Research Center (RSRC)
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Computational Bioscience Research Center (CBRC)
Center for Desert Agriculture
Imaging and Characterization Core Lab
MetadataShow full item record
AbstractBackground Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.
CitationHologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC Genomics
SponsorsThis work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.
PublisherSpringer Science + Business Media
Is Supplemented ByTaewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026
CollectionsArticles; Biological and Environmental Sciences and Engineering (BESE) Division; Red Sea Research Center (RSRC); Computational Bioscience Research Center (CBRC); Desert Agriculture Initiative; Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division; Advanced Nanofabrication, Imaging and Characterization Core Lab; Reef Genomics, part of the Global Ocean Genome Project
- Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.
- Authors: Moitinho-Silva L, Bayer K, Cannistraci CV, Giles EC, Ryu T, Seridi L, Ravasi T, Hentschel U
- Issue date: 2014 Mar
- Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.
- Authors: Moitinho-Silva L, Seridi L, Ryu T, Voolstra CR, Ravasi T, Hentschel U
- Issue date: 2014 Dec
- Diversity, structure and convergent evolution of the global sponge microbiome.
- Authors: Thomas T, Moitinho-Silva L, Lurgi M, Björk JR, Easson C, Astudillo-García C, Olson JB, Erwin PM, López-Legentil S, Luter H, Chaves-Fonnegra A, Costa R, Schupp PJ, Steindler L, Erpenbeck D, Gilbert J, Knight R, Ackermann G, Victor Lopez J, Taylor MW, Thacker RW, Montoya JM, Hentschel U, Webster NS
- Issue date: 2016 Jun 16
- The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.
- Authors: Polónia AR, Cleary DF, Freitas R, de Voogd NJ, Gomes NC
- Issue date: 2015 Jan
- Genomic insights into the marine sponge microbiome.
- Authors: Hentschel U, Piel J, Degnan SM, Taylor MW
- Issue date: 2012 Sep