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    Random walk in genome space: A key ingredient of intermittent dynamics of community assembly on evolutionary time scales

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    Type
    Article
    Authors
    Murase, Yohsuke
    Shimada, Takashi
    Ito, Nobuyasu
    Rikvold, Per Arne
    KAUST Grant Number
    KUK-I1-005-04
    Date
    2010-06
    Permanent link to this record
    http://hdl.handle.net/10754/599438
    
    Metadata
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    Abstract
    Community assembly is studied using individual-based multispecies models. The models have stochastic population dynamics with mutation, migration, and extinction of species. Mutants appear as a result of mutation of the resident species, while migrants have no correlation with the resident species. It is found that the dynamics of community assembly with mutations are quite different from the case with migrations. In contrast to mutation models, which show intermittent dynamics of quasi-steady states interrupted by sudden reorganizations of the community, migration models show smooth and gradual renewal of the community. As a consequence, instead of the 1/f diversity fluctuations found for the mutation models, 1/f2, random-walk like fluctuations are observed for the migration models. In addition, a characteristic species-lifetime distribution is found: a power law that is cut off by a "skewed" distribution in the long-lifetime regime. The latter has a longer tail than a simple exponential function, which indicates an age-dependent species-mortality function. Since this characteristic profile has been observed, both in fossil data and in several other mathematical models, we conclude that it is a universal feature of macroevolution. © 2010 Elsevier Ltd.
    Citation
    Murase Y, Shimada T, Ito N, Rikvold PA (2010) Random walk in genome space: A key ingredient of intermittent dynamics of community assembly on evolutionary time scales. Journal of Theoretical Biology 264: 663–672. Available: http://dx.doi.org/10.1016/j.jtbi.2010.03.043.
    Sponsors
    We are grateful for helpful comments on the manuscript by A.G. Rossberg, V. Sevim, and E. Filotas, and for a useful conversation with L.H. Liow. This work was partly supported by 21st Century COE Program "Applied Physics on Strong Correlation" from the Ministry of Education, Culture, Sports, Science, and Technology of Japan, the JSPS (No. 19340110), and GRP of KAUST (KUK-I1-005-04), and a Grant-in-Aid for Young Scientists (B) No. 21740284 to T. S. from the Ministry of Education, Culture, Sports, Science and Technology of Japan. Y.M. appreciates hospitality at Florida State University, where work was supported by U.S. NSF Grant Nos. DMR-0444051 and DMR-0802288.
    Publisher
    Elsevier BV
    Journal
    Journal of Theoretical Biology
    DOI
    10.1016/j.jtbi.2010.03.043
    PubMed ID
    20362586
    ae974a485f413a2113503eed53cd6c53
    10.1016/j.jtbi.2010.03.043
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