• Login
    View Item 
    •   Home
    • Office of Sponsored Research (OSR)
    • KAUST Funded Research
    • Publications Acknowledging KAUST Support
    • View Item
    •   Home
    • Office of Sponsored Research (OSR)
    • KAUST Funded Research
    • Publications Acknowledging KAUST Support
    • View Item
    JavaScript is disabled for your browser. Some features of this site may not work without it.

    Browse

    All of KAUSTCommunitiesIssue DateSubmit DateThis CollectionIssue DateSubmit Date

    My Account

    Login

    Quick Links

    Open Access PolicyORCID LibguideTheses and Dissertations LibguideSubmit an Item

    Statistics

    Display statistics

    Evaluation of residue-residue contact predictions in CASP9

    • CSV
    • RefMan
    • EndNote
    • BibTex
    • RefWorks
    Type
    Article
    Authors
    Monastyrskyy, Bohdan
    Fidelis, Krzysztof cc
    Tramontano, Anna
    Kryshtafovych, Andriy cc
    KAUST Grant Number
    KUK-I1-012-43
    Date
    2011-09-17
    Online Publication Date
    2011-09-17
    Print Publication Date
    2011
    Permanent link to this record
    http://hdl.handle.net/10754/598253
    
    Metadata
    Show full item record
    Abstract
    This work presents the results of the assessment of the intramolecular residue-residue contact predictions submitted to CASP9. The methodology for the assessment does not differ from that used in previous CASPs, with two basic evaluation measures being the precision in recognizing contacts and the difference between the distribution of distances in the subset of predicted contact pairs versus all pairs of residues in the structure. The emphasis is placed on the prediction of long-range contacts (i.e., contacts between residues separated by at least 24 residues along sequence) in target proteins that cannot be easily modeled by homology. Although there is considerable activity in the field, the current analysis reports no discernable progress since CASP8.
    Citation
    Monastyrskyy B, Fidelis K, Tramontano A, Kryshtafovych A (2011) Evaluation of residue-residue contact predictions in CASP9. Proteins: Structure, Function, and Bioinformatics 79: 119–125. Available: http://dx.doi.org/10.1002/prot.23160.
    Sponsors
    Grant sponsor: National Library of Medicine (NIH/NLM); Grant number: LM007085; Grant sponsor: KAUST Award; Grant number: KUK-I1-012-43.
    Publisher
    Wiley
    Journal
    Proteins: Structure, Function, and Bioinformatics
    DOI
    10.1002/prot.23160
    PubMed ID
    21928322
    PubMed Central ID
    PMC3226919
    ae974a485f413a2113503eed53cd6c53
    10.1002/prot.23160
    Scopus Count
    Collections
    Publications Acknowledging KAUST Support

    entitlement

    Related articles

    • Evaluation of residue-residue contact prediction in CASP10.
    • Authors: Monastyrskyy B, D'Andrea D, Fidelis K, Tramontano A, Kryshtafovych A
    • Issue date: 2014 Feb
    • Evaluation of disorder predictions in CASP9.
    • Authors: Monastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A
    • Issue date: 2011
    • Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.
    • Authors: Ezkurdia I, Graña O, Izarzugaza JM, Tress ML
    • Issue date: 2009
    • Assessing the accuracy of contact and distance predictions in CASP14.
    • Authors: Ruiz-Serra V, Pontes C, Milanetti E, Kryshtafovych A, Lepore R, Valencia A
    • Issue date: 2021 Dec
    • Improving accuracy of protein contact prediction using balanced network deconvolution.
    • Authors: Sun HP, Huang Y, Wang XF, Zhang Y, Shen HB
    • Issue date: 2015 Mar
    DSpace software copyright © 2002-2022  DuraSpace
    Quick Guide | Contact Us | KAUST University Library
    Open Repository is a service hosted by 
    Atmire NV
     

    Export search results

    The export option will allow you to export the current search results of the entered query to a file. Different formats are available for download. To export the items, click on the button corresponding with the preferred download format.

    By default, clicking on the export buttons will result in a download of the allowed maximum amount of items. For anonymous users the allowed maximum amount is 50 search results.

    To select a subset of the search results, click "Selective Export" button and make a selection of the items you want to export. The amount of items that can be exported at once is similarly restricted as the full export.

    After making a selection, click one of the export format buttons. The amount of items that will be exported is indicated in the bubble next to export format.