KAUST Grant NumberKUK-I1-012-43
Online Publication Date2011-09-16
Print Publication Date2011
Permanent link to this recordhttp://hdl.handle.net/10754/598246
MetadataShow full item record
AbstractLack of stable three-dimensional structure, or intrinsic disorder, is a common phenomenon in proteins. Naturally, unstructured regions are proven to be essential for carrying function by many proteins, and therefore identification of such regions is an important issue. CASP has been assessing the state of the art in predicting disorder regions from amino acid sequence since 2002. Here, we present the results of the evaluation of the disorder predictions submitted to CASP9. The assessment is based on the evaluation measures and procedures used in previous CASPs. The balanced accuracy and the Matthews correlation coefficient were chosen as basic measures for evaluating the correctness of binary classifications. The area under the receiver operating characteristic curve was the measure of choice for evaluating probability-based predictions of disorder. The CASP9 methods are shown to perform slightly better than the CASP7 methods but not better than the methods in CASP8. It was also shown that capability of most CASP9 methods to predict disorder decreases with increasing minimum disorder segment length.
CitationMonastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A (2011) Evaluation of disorder predictions in CASP9. Proteins: Structure, Function, and Bioinformatics 79: 107–118. Available: http://dx.doi.org/10.1002/prot.23161.
SponsorsGrant sponsor: US National Library of Medicine (NIH/NLM); Grant number: LM007085; Grant sponsor: King Abdullah University of Science and Technology (KAUST); Grant number: KUK-I1-012-43.
PubMed Central IDPMC3212657
CollectionsPublications Acknowledging KAUST Support
- Assessment of protein disorder region predictions in CASP10.
- Authors: Monastyrskyy B, Kryshtafovych A, Moult J, Tramontano A, Fidelis K
- Issue date: 2014 Feb
- Evaluation of residue-residue contact predictions in CASP9.
- Authors: Monastyrskyy B, Fidelis K, Tramontano A, Kryshtafovych A
- Issue date: 2011
- Assessment of disorder predictions in CASP8.
- Authors: Noivirt-Brik O, Prilusky J, Sussman JL
- Issue date: 2009
- Evaluation of residue-residue contact prediction in CASP10.
- Authors: Monastyrskyy B, D'Andrea D, Fidelis K, Tramontano A, Kryshtafovych A
- Issue date: 2014 Feb
- Assessment of disorder predictions in CASP7.
- Authors: Bordoli L, Kiefer F, Schwede T
- Issue date: 2007