Recommendations and Standardization of Biomarker Quantification Using NMR-based Metabolomics with Particular Focus on Urinary Analysis
AuthorsEmwas, Abdul-Hamid M.
McKay, Ryan T.
Zeri, Ana Carolina
Gowda, G. A. Nagana
Salek, Reza M
Wishart, David S.
KAUST DepartmentComputational Bioscience Research Center (CBRC)
Computer Science Program
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Imaging and Characterization Core Lab
Online Publication Date2016-01-20
Print Publication Date2016-02-05
Permanent link to this recordhttp://hdl.handle.net/10754/593365
MetadataShow full item record
AbstractNMR-based metabolomics has shown considerable promise in disease diagnosis and biomarker discovery because it allows one to non-destructively identify and quantify large numbers of novel metabolite biomarkers in both biofluids and tissues. Indeed, precise metabolite quantification is a necessary prerequisite to move any chemical biomarker or biomarker panel from the lab into the clinic. Among the many biofluids (urine, serum, plasma, cerebrospinal fluid and saliva) commonly used for disease diagnosis and prognosis, urine has several advantages. It is abundant, sterile, easily obtained, needs little sample preparation and does not require any invasive medical procedures for collection. Furthermore, urine captures and concentrates many “unwanted” or “undesirable” compounds throughout the body, thereby providing a rich source of potentially useful disease biomarkers. However, the incredible variation in urine chemical concentrations due to effects such as gender, age, diet, life style, health conditions, and physical activity make the analysis of urine and the identification of useful urinary biomarkers by NMR quite challenging. In this review, we discuss a number of the most significant issues regarding NMR-based urinary metabolomics with a specific emphasis on metabolite quantification for disease biomarker applications. We also propose a number of data collection and instrumental recommendations regarding NMR pulse sequences, acceptable acquisition parameter ranges, relaxation effects on quantitation, proper handling of instrumental differences, as well as recommendations regarding sample preparation and biomarker assessment.
CitationRecommendations and Standardization of Biomarker Quantification Using NMR-based Metabolomics with Particular Focus on Urinary Analysis 2016 Journal of Proteome Research
PublisherAmerican Chemical Society (ACS)
JournalJournal of Proteome Research
- Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review.
- Authors: Emwas AH, Luchinat C, Turano P, Tenori L, Roy R, Salek RM, Ryan D, Merzaban JS, Kaddurah-Daouk R, Zeri AC, Nagana Gowda GA, Raftery D, Wang Y, Brennan L, Wishart DS
- Issue date: 2015
- Assessment of <sup>1</sup>H NMR-based metabolomics analysis for normalization of urinary metals against creatinine.
- Authors: Cassiède M, Nair S, Dueck M, Mino J, McKay R, Mercier P, Quémerais B, Lacy P
- Issue date: 2017 Jan
- Sample Preparation and Data Analysis for NMR-Based Metabolomics.
- Authors: Mal TK, Tian Y, Patterson AD
- Issue date: 2021
- Signal intensities derived from different NMR probes and parameters contribute to variations in quantification of metabolites.
- Authors: Lacy P, McKay RT, Finkel M, Karnovsky A, Woehler S, Lewis MJ, Chang D, Stringer KA
- Issue date: 2014
- Development of a universal metabolome-standard method for long-term LC-MS metabolome profiling and its application for bladder cancer urine-metabolite-biomarker discovery.
- Authors: Peng J, Chen YT, Chen CL, Li L
- Issue date: 2014 Jul 1