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dc.contributor.authorChandramouli, Kondethimmanahalli
dc.contributor.authorAl-Aqeel, Sarah
dc.contributor.authorRyu, Tae Woo
dc.contributor.authorZhang, Huoming
dc.contributor.authorSeridi, Loqmane
dc.contributor.authorGhosheh, Yanal
dc.contributor.authorQian, Pei-Yuan
dc.contributor.authorRavasi, Timothy
dc.date.accessioned2015-12-16T13:04:26Z
dc.date.available2015-12-16T13:04:26Z
dc.date.issued2015-12-15
dc.identifier.citationTranscriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea 2015, 16 (1) BMC Genomics
dc.identifier.issn1471-2164
dc.identifier.pmid26666348
dc.identifier.doi10.1186/s12864-015-2262-1
dc.identifier.urihttp://hdl.handle.net/10754/584004
dc.description.abstractBackground The barnacle Balanus amphitrite is widely distributed in marine shallow and tidal waters, and has significant economic and ecological importance. Nauplii, the first larval stage of most crustaceans, are extremely abundant in the marine zooplankton. However, a lack of genome information has hindered elucidation of the molecular mechanisms of development, settlement and survival strategies in extreme marine environments. We sequenced and constructed the genome dataset for nauplii to obtain comprehensive larval genetic information. We also investigated iTRAQ-based protein expression patterns to reveal the molecular basis of nauplii development, and to gain information on larval survival strategies in the Red Sea marine environment. Results A nauplii larval transcript dataset, containing 92,117 predicted open reading frames (ORFs), was constructed and used as a reference for the proteome analysis. Genes related to translation, oxidative phosphorylation and cytoskeletal development were highly abundant. We observed remarkable plasticity in the proteome of Red Sea larvae. The proteins associated with development, stress responses and osmoregulation showed the most significant differences between the two larval populations studied. The synergistic overexpression of heat shock and osmoregulatory proteins may facilitate larval survival in intertidal habitats or in extreme environments. Conclusions We presented, for the first time, comprehensive transcriptome and proteome datasets for Red Sea nauplii. The datasets provide a foundation for future investigations focused on the survival mechanisms of other crustaceans in extreme marine environments.
dc.language.isoen
dc.publisherSpringer Nature
dc.relation.urlhttp://www.biomedcentral.com/1471-2164/16/1063
dc.rightsThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
dc.subjectB. amphitrite
dc.subjectRed sea
dc.subjectTranscriptomics
dc.subjectProteomics
dc.subjectAdaptation
dc.titleTranscriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
dc.typeArticle
dc.contributor.departmentApplied Mathematics and Computational Science Program
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentBioscience Core Lab
dc.contributor.departmentBioscience Program
dc.contributor.departmentChemical and Biological Engineering Program
dc.contributor.departmentCompetitive Research Funds
dc.contributor.departmentComputational Bioscience Research Center (CBRC)
dc.contributor.departmentComputer Science Program
dc.contributor.departmentKAUST Environmental Epigenetic Program (KEEP)
dc.contributor.departmentKAUST Global Collaborative Research Program
dc.contributor.departmentOCRF- Special Academic Partnership
dc.contributor.departmentProteomics and Protein Expression
dc.identifier.journalBMC Genomics
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionDivision of Life Science, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong
dc.contributor.affiliationKing Abdullah University of Science and Technology (KAUST)
kaust.personChandramouli, Kondethimmanahalli
kaust.personAl-Aqeel, Sarah
kaust.personRyu, Tae Woo
kaust.personZhang, Huoming
kaust.personSeridi, Loqmane
kaust.personGhosheh, Yanal
kaust.personRavasi, Timothy
dc.relation.issupplementedbyDOI:10.6084/m9.figshare.c.3629591
refterms.dateFOA2018-06-13T10:29:59Z
display.relations<b> Is Supplemented By:</b> <br/> <ul><li><i>[Dataset]</i> <br/> Kondethimmanahalli Chandramouli, Al-Aqeel, S., Taewoo Ryu, Huoming Zhang, Loqmane Seridi, Yanal Ghosheh, … Ravasi, T. (2015). Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea. Figshare. https://doi.org/10.6084/m9.figshare.c.3629591. DOI: <a href="https://doi.org/10.6084/m9.figshare.c.3629591">10.6084/m9.figshare.c.3629591</a> HANDLE: <a href="http://hdl.handle.net/10754/624137">10754/624137</a></li></ul>
dc.date.published-online2015-12-15
dc.date.published-print2015-12


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