Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
dc.contributor.author | Chandramouli, Kondethimmanahalli | |
dc.contributor.author | Al-Aqeel, Sarah | |
dc.contributor.author | Ryu, Tae Woo | |
dc.contributor.author | Zhang, Huoming | |
dc.contributor.author | Seridi, Loqmane | |
dc.contributor.author | Ghosheh, Yanal | |
dc.contributor.author | Qian, Pei-Yuan | |
dc.contributor.author | Ravasi, Timothy | |
dc.date.accessioned | 2015-12-16T13:04:26Z | |
dc.date.available | 2015-12-16T13:04:26Z | |
dc.date.issued | 2015-12-15 | |
dc.identifier.citation | Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea 2015, 16 (1) BMC Genomics | |
dc.identifier.issn | 1471-2164 | |
dc.identifier.pmid | 26666348 | |
dc.identifier.doi | 10.1186/s12864-015-2262-1 | |
dc.identifier.uri | http://hdl.handle.net/10754/584004 | |
dc.description.abstract | Background The barnacle Balanus amphitrite is widely distributed in marine shallow and tidal waters, and has significant economic and ecological importance. Nauplii, the first larval stage of most crustaceans, are extremely abundant in the marine zooplankton. However, a lack of genome information has hindered elucidation of the molecular mechanisms of development, settlement and survival strategies in extreme marine environments. We sequenced and constructed the genome dataset for nauplii to obtain comprehensive larval genetic information. We also investigated iTRAQ-based protein expression patterns to reveal the molecular basis of nauplii development, and to gain information on larval survival strategies in the Red Sea marine environment. Results A nauplii larval transcript dataset, containing 92,117 predicted open reading frames (ORFs), was constructed and used as a reference for the proteome analysis. Genes related to translation, oxidative phosphorylation and cytoskeletal development were highly abundant. We observed remarkable plasticity in the proteome of Red Sea larvae. The proteins associated with development, stress responses and osmoregulation showed the most significant differences between the two larval populations studied. The synergistic overexpression of heat shock and osmoregulatory proteins may facilitate larval survival in intertidal habitats or in extreme environments. Conclusions We presented, for the first time, comprehensive transcriptome and proteome datasets for Red Sea nauplii. The datasets provide a foundation for future investigations focused on the survival mechanisms of other crustaceans in extreme marine environments. | |
dc.language.iso | en | |
dc.publisher | Springer Nature | |
dc.relation.url | http://www.biomedcentral.com/1471-2164/16/1063 | |
dc.rights | This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. | |
dc.subject | B. amphitrite | |
dc.subject | Red sea | |
dc.subject | Transcriptomics | |
dc.subject | Proteomics | |
dc.subject | Adaptation | |
dc.title | Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea | |
dc.type | Article | |
dc.contributor.department | Applied Mathematics and Computational Science Program | |
dc.contributor.department | Biological and Environmental Sciences and Engineering (BESE) Division | |
dc.contributor.department | Bioscience Core Lab | |
dc.contributor.department | Bioscience Program | |
dc.contributor.department | Chemical and Biological Engineering Program | |
dc.contributor.department | Competitive Research Funds | |
dc.contributor.department | Computational Bioscience Research Center (CBRC) | |
dc.contributor.department | Computer Science Program | |
dc.contributor.department | KAUST Environmental Epigenetic Program (KEEP) | |
dc.contributor.department | KAUST Global Collaborative Research Program | |
dc.contributor.department | OCRF- Special Academic Partnership | |
dc.contributor.department | Proteomics and Protein Expression | |
dc.identifier.journal | BMC Genomics | |
dc.eprint.version | Publisher's Version/PDF | |
dc.contributor.institution | Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong | |
dc.contributor.affiliation | King Abdullah University of Science and Technology (KAUST) | |
kaust.person | Chandramouli, Kondethimmanahalli | |
kaust.person | Al-Aqeel, Sarah | |
kaust.person | Ryu, Tae Woo | |
kaust.person | Zhang, Huoming | |
kaust.person | Seridi, Loqmane | |
kaust.person | Ghosheh, Yanal | |
kaust.person | Ravasi, Timothy | |
dc.relation.issupplementedby | DOI:10.6084/m9.figshare.c.3629591 | |
refterms.dateFOA | 2018-06-13T10:29:59Z | |
display.relations | <b> Is Supplemented By:</b> <br/> <ul><li><i>[Dataset]</i> <br/> Kondethimmanahalli Chandramouli, Al-Aqeel, S., Taewoo Ryu, Huoming Zhang, Loqmane Seridi, Yanal Ghosheh, … Ravasi, T. (2015). Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea. Figshare. https://doi.org/10.6084/m9.figshare.c.3629591. DOI: <a href="https://doi.org/10.6084/m9.figshare.c.3629591">10.6084/m9.figshare.c.3629591</a> HANDLE: <a href="http://hdl.handle.net/10754/624137">10754/624137</a></li></ul> | |
dc.date.published-online | 2015-12-15 | |
dc.date.published-print | 2015-12 |
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