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    Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei

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    srep12525.pdf
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    Type
    Article
    Authors
    Vega, Fernando E.
    Brown, Stuart M.
    Chen, Hao
    Shen, Eric
    Nair, Mridul
    Ceja-Navarro, Javier A.
    Brodie, Eoin L.
    Infante, Francisco
    Dowd, Patrick F.
    Pain, Arnab cc
    KAUST Department
    Biological and Environmental Sciences and Engineering (BESE) Division
    Bioscience Program
    Computational Bioscience Research Center (CBRC)
    Pathogen Genomics Laboratory
    Date
    2015-07-31
    Online Publication Date
    2015-07-31
    Print Publication Date
    2015-12
    Permanent link to this record
    http://hdl.handle.net/10754/576008
    
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    Abstract
    The coffee berry borer, Hypothenemus hampei, is the most economically important insect pest of coffee worldwide. We present an analysis of the draft genome of the coffee berry borer, the third genome for a Coleopteran species. The genome size is ca. 163 Mb with 19,222 predicted protein-coding genes. Analysis was focused on genes involved in primary digestion as well as gene families involved in detoxification of plant defense molecules and insecticides, such as carboxylesterases, cytochrome P450, gluthathione S-transferases, ATP-binding cassette transporters, and a gene that confers resistance to the insecticide dieldrin. A broad range of enzymes capable of degrading complex polysaccharides were identified. We also evaluated the pathogen defense system and found homologs to antimicrobial genes reported in the Drosophila genome. Ten cases of horizontal gene transfer were identified with evidence for expression, integration into the H. hampei genome, and phylogenetic evidence that the sequences are more closely related to bacterial rather than eukaryotic genes. The draft genome analysis broadly expands our knowledge on the biology of a devastating tropical insect pest and suggests new pest management strategies.
    Citation
    Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei 2015, 5:12525 Scientific Reports
    Publisher
    Springer Nature
    Journal
    Scientific Reports
    DOI
    10.1038/srep12525
    PubMed ID
    26228545
    Additional Links
    http://www.nature.com/doifinder/10.1038/srep12525
    ae974a485f413a2113503eed53cd6c53
    10.1038/srep12525
    Scopus Count
    Collections
    Articles; Biological and Environmental Sciences and Engineering (BESE) Division; Bioscience Program; Computational Bioscience Research Center (CBRC)

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