RSS 1.0Datasets
Recent Submissions
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The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptions to host-switching(NCBI, 2021-09-05) [Bioproject, Dataset]Plasmodium simium, a parasite of various species of Platyrrhini monkeys whose range is restricted to the Atlantic Forest of Brazil, is genetically and morphologically similar to P. vivax. Based on this similarity, it appears likely that P. simium originated as a parasite of monkeys in Brazil following a host switch from humans carrying P. vivax. The 2015 outbreak of P. simium in the local human population raised questions about the degree of divergence that has occurred between P. vivax and P. simium, and whether adaptation to monkeys has led to the evolution of a parasite with clinical relevance to human health that differs from that of P. vivax. The degree and nature of adaptation to a non-human primate host and a sylvatic transmission cycle that has occurred in P. simium following its anthroponotic origin is of relevance to the understanding of how malaria parasites adapt to new hosts. It is also of interest to determine whether the current, human-infecting P. simium parasites have recently undergone changes at the genomic level that have allowed them to infect people in this region, as it has previously been suggested that P. simium has historically lacked the ability to infect man.
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Dataset for multispectral illumination estimation using deep unrolling network(KAUST Research Repository, 2021-08-02) [Dataset]
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Supplementary material for the work "Revealing 60 years of earthquake swarms in the southern Red Sea, Afar and the Gulf of Aden"(International Seismological Centre, 2021-07-27) [dataset]
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Airborne Eukaryotes in the Red Sea Region(NCBI, 2021-06-29) [Bioproject, Dataset]Airborne Eukaryotic Communities (AEC), rank among the least studied aerobiological components. We describe here the AECs in the global dust belt, the area between the west coast of North Africa and Central Asia, which supports the highest dust fluxes on the planet. Specifically, we sampled atmospheric dust over 14 months from onshore and offshore locations of the Red Sea, the only waterbody that entirely encompassed in the global dust belt. We also sampled surface water samples to determine the potential transfer of taxa across the air-sea interface. To target the eukaryotes, we performed Miseq sequencing of atmospheric dust and surface water samples. Analysis of amplicon sequencing indicates a total pool of 18,816 sequence variants (SVs). Among 33 unique eukaryotic phyla in the AEC over the Red Sea, the most dominant taxa were Streptophyta, Apicomplexa, and Ascomycota. Aerosol eukaryotes originated from various sources and formed more diverse communities than eukaryotic communities of the Red Sea surface water. AECs were dominated by phylotypes released from plant material and soils, and including taxa reported to be harmful to human health. The community composition was significantly influenced by sampling locations and seasonal conditions but not by the origin of the air masses nor dust loads.
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Data for "Competition on Spatial Statistics for Large Datasets"(KAUST Research Repository, 2021-05-10) [Dataset]The enclosed datasets have been generated by the internal spatial data generator tool included in the ExaGeoStat software (https://github.com/ecrc/exageostat). It was used for the 2021 KAUST Competition on Spatial Statistics for Large Datasets (https://cemse.kaust.edu.sa/stsds/kaust-competition-spatial-statistics-large-datasets). The competition had four parts (Sub-competition 1a, Sub-competition 1b, Sub-competition 2a, and Sub-competition 2b). The main purpose of the competition was to reassess existing approximation methods on large spatial datasets in a uniform way that guarantees a fair comparison. The true parameters used for generating each dataset are provided in the PDF file attached with the datasets.
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Suakin deep metagenomes(NCBI, 2021-05-04) [Bioproject, Dataset]Metagenomes obtained from the brine seawater interface of the Suakin Deep in the Red Sea
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Data for "Immiscible fluid displacement in fractured media"(KAUST Research Repository, 2021-04-28) [Dataset]
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Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity(NCBI, 2021-03-22) [Bioproject, Dataset]We report the transcriptome composition of ahl13-1 compared to WT (col-0) plant without treatment and after Pst hrcC-application Overall design: Illumina high-sequencing plateform was used to analyse the transcriptome composition of col0 and ahl13-1 under treated and untreated conditions. col0 samples are in GEO Series GSE118854.
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Microbial communities of wheat plants inoculated with endophytic bacterium Enterobacter sp. SA187(NCBI, 2021-03-16) [Bioproject, Dataset]Global warming has become a critical challenge to food safety, causing severe yield losses of major crops worldwide. Here, we report that the endophytic bacterium Enterobacter sp. SA187 induces thermotolerance of crops in a sustainable manner. Microbiome diversity of wheat plants is positively influenced by SA187 in open field agriculture, indicating that beneficial microbes can be a powerful tool to enhance agriculture in open field agriculture. Overall design: We examined the effect the SA187 inoculation on the root endosphere microbiome of wheat plant growing under desert farming condition.
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Molecular mechanisms of Enterobacter sp. SA187 induced thermotolerance in Arabidopsis thaliana(NCBI, 2021-03-16) [Bioproject, Dataset]Global warming and heat stress belong to the most critical environmental challenges to agriculture worldwide, causing severe losses of major crop yields. In present study we report that the endophytic bacterium Enterobacter sp. SA187 protects Arabidopsis thaliana to heat stress. To understand the mechanisms at molecular level we performed RNA-seq Overall design: mRNA seq to elucidate the SA187 mediated thermotolerance in Arabidopsis thaliana inoculated with entrobacter sp SA187
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CCDC 2061332: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethenylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061331: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061333: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene unknown solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061332: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethenylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2064118: Experimental Crystal Structure Determination :(Cambridge Crystallographic Data Centre, 2021-02-21) [Dataset]
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CCDC 2064119: Experimental Crystal Structure Determination : ([(6H-dibenzo[d,f][1,3,2]dioxaphosphepin-6-yl)(methyl)carbamoyl](methyl)amido)-(eta5-pentamethylcyclopentadienyl)-chloro-iridium monohydrate(Cambridge Crystallographic Data Centre, 2021-02-21) [Dataset]
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UV and bacteriophages treatment: chemicals-free approach to reduce fouling in anaerobic membrane bioreactors(NCBI, 2021-02-17) [Bioproject, Dataset]In this study the effect of a cocktail of 3 isolated Acinetobacter spp. bacteriophages in combination with UV exposure was analyzed for their ability to reduce anaerobic membrane biofouling in terms of biofilm dispersion and morphology alteration. This effect was compared with single applications of the two treatments at different membrane biofouling rate to investigate the influence of UV irradiation on the bacteriophages infection. The mixed treatment was then further compared with the common membrane cleaning technique, based on a mix of chemicals, to examine its effective applicability to reduce AnMBR biofouling.
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CCDC 1540140: Experimental Crystal Structure Determination : 4-aminopyridin-1-ium chloride hydrate(Cambridge Crystallographic Data Centre, 2021-02-16) [Dataset]
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CCDC 1540141: Experimental Crystal Structure Determination : 4-aminopyridinium chloride monohydrate(Cambridge Crystallographic Data Centre, 2021-02-16) [Dataset]
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CCDC 1897428: Experimental Crystal Structure Determination : 4-aminopyridin-1-ium chloride hydrate(Cambridge Crystallographic Data Centre, 2021-02-16) [Dataset]
