RSS 1.0Datasets
Recent Submissions
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Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity(NCBI, 2021-03-22) [Bioproject, Dataset]We report the transcriptome composition of ahl13-1 compared to WT (col-0) plant without treatment and after Pst hrcC-application Overall design: Illumina high-sequencing plateform was used to analyse the transcriptome composition of col0 and ahl13-1 under treated and untreated conditions. col0 samples are in GEO Series GSE118854.
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Microbial communities of wheat plants inoculated with endophytic bacterium Enterobacter sp. SA187(NCBI, 2021-03-16) [Bioproject, Dataset]Global warming has become a critical challenge to food safety, causing severe yield losses of major crops worldwide. Here, we report that the endophytic bacterium Enterobacter sp. SA187 induces thermotolerance of crops in a sustainable manner. Microbiome diversity of wheat plants is positively influenced by SA187 in open field agriculture, indicating that beneficial microbes can be a powerful tool to enhance agriculture in open field agriculture. Overall design: We examined the effect the SA187 inoculation on the root endosphere microbiome of wheat plant growing under desert farming condition.
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Molecular mechanisms of Enterobacter sp. SA187 induced thermotolerance in Arabidopsis thaliana(NCBI, 2021-03-16) [Bioproject, Dataset]Global warming and heat stress belong to the most critical environmental challenges to agriculture worldwide, causing severe losses of major crop yields. In present study we report that the endophytic bacterium Enterobacter sp. SA187 protects Arabidopsis thaliana to heat stress. To understand the mechanisms at molecular level we performed RNA-seq Overall design: mRNA seq to elucidate the SA187 mediated thermotolerance in Arabidopsis thaliana inoculated with entrobacter sp SA187
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CCDC 2061332: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethenylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061332: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethenylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061333: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene unknown solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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CCDC 2061331: Experimental Crystal Structure Determination : 7,14,25,32,43,50-hexaazadecacyclo[50.2.2.22,5.216,19.220,23.234,37.238,41.08,13.026,31.044,49]hexahexaconta-1(54),2,4,6,14,16,18,20,22,24,32,34,36,38,40,42,50,52,55,57,59,61,63,65-tetracosaene ethylbenzene solvate(Cambridge Crystallographic Data Centre, 2021-03-11) [Dataset]
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Simulation data for the Toba supervolcano eruption caused severe tropical ozone depletion(KAUST Research Repository, 2021-02-14) [Dataset]NASA GISS ModelE simulations used in the Osipov et al., Toba supervolcano eruption caused severe tropical ozone depletion, 2021
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CCDC 2020845: Experimental Crystal Structure Determination : (2-{[9,9-bis(4-hexylphenyl)-9H-indeno[1,2-b]thieno[2,3-d]thiophen-2-yl]methylidene}-3-oxo-2,3-dihydro-1H-inden-1-ylidene)propanedinitrile(Cambridge Crystallographic Data Centre, 2021-02-01) [Dataset]
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Datasets for "Forecasting High-Frequency Spatio-Temporal Wind Power with Dimensionally ReducedEcho State Networks"(KAUST Research Repository, 2021-01-31) [Dataset]The datasets for "Forecasting High-Frequency Spatio-Temporal Wind Power with Dimensionally ReducedEcho State Networks"
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Protein-protein interactions decoys datasets for machine learning algorithm development(KAUST Research Repository, 2021-01-20) [Dataset]This is the most complete and diverse protein docking decoys set derived from the Benchmark5, Scorers_set. We used three different rigid-body docking programs to generate the decoys for the Bechmark5. We analyzed all docking decoys with more than 150 different scoring functions from different sources ( CCharppi, FreeSASA, CIPS, CONSRANK). We provide a balanced and unbalanced version of the data. This balanced data is intended for the training and test of machine learning algorithms. the unbalanced data is provided to simulated the real-world scenario. We also provide a set of rigid-body docking decoys from Interactome3D that spans 1391 interactions. We obtained the labels for this set using a weakly-supervised approach we called hAIkal. We used this data to augment the train data and improve machine learning classifiers.
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Protein-protein benchmark5 decoys balanced dataset(KAUST Research Repository, 2021-01-19) [Dataset]This is the most complete and diverse protein docking decoys set derived from the Benchmark5. We used three different rigid-body docking programs to generate the decoys. We analyzed these docking decoys with more than 150 different scoring functions from different sources ( CCharppi, FreeSASA, CIPS, CONSRANK). This version of the dataset is balanced with the raw values from the scoring functions. This data is intended for the training of Machine learning algorithms.
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Per station summaries of acoustic water column properties during MALASPINA-2010(PANGAEA - Data Publisher for Earth & Environmental Science, 2021) [Dataset]This file provides daily/per station summaries of daytime and nighttime acoustic data (omitting data recorded within 1 hour of sunrise and sunset), specifically per day and night mesopelagic average nautical area scattering coefficient (NASC 200-1000 m), average total NASC (0-1000 m), and weighted mean depths (WMD) of mesopelagic and total NASC. Migration amplitude is the difference in day and night WMD, day to night ratio is the ratio of daytime to nighttime total NASC (0-1000 m) and migration ratio is calculated from the relative drop in mesopelagic backscatter (NASC 200-1000 m) during night. For details of calculations see Klevjer et al. 2016. Note that the provided positions correspond to the fixed Malapina station at that date, not the start and end point of the data collection.
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Genome-wide association study in quinoa reveals selection pattern typical for crops with a short breeding history(Dryad, 2021) [Dataset]Quinoa germplasm preserves useful and substantial genetic variation, yet it remains untapped due to a lack of implementation of modern breeding tools. We have integrated field and sequence data to characterize a large diversity panel of quinoa. Whole-genome sequencing of 310 accessions revealed 2.9 million polymorphic high confidence SNP loci. Highland and Lowland quinoa were clustered into two main groups, with FST divergence of 0.36 and fast LD decay of 6.5 and 49.8 Kb, respectively. A genome-wide association study uncovered 600 SNPs stably associated with 17 agronomic traits. Two candidate genes are associated with thousand seed weight, and a resistance gene analog is associated with downy mildew resistance. We also identified pleiotropically acting loci for four agronomic traits that are highly responding to photoperiod hence important for the adaptation to different environments. This work demonstrates the use of re-sequencing data of an orphan crop, which is partially domesticated to rapidly identify marker-trait association and provides the underpinning elements for genomics-enabled quinoa breeding.
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CCDC 2023108: Experimental Crystal Structure Determination : catena-((mu-2,2'-bipyridine-5,5'-dicarboxylato)-(mu-hydroxo)-bis(mu-4,4',4''-(1H-imidazole-2,4,5-triyl)tripyridine)-tri-cobalt trinitrate dimethylacetamide methanol solvate)(Cambridge Crystallographic Data Centre, 2020-12-17) [Dataset]
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CCDC 1406311: Experimental Crystal Structure Determination : (mu-4,4'-[[1,1'-binaphthalene]-2,2'-diylbis(oxymethylene)]bis{3-ethyl-1-[5-methyl-2-(propan-2-yl)cyclohexyl]-1H-1,2,3-triazol-5-ylidene})-dichloro-di-gold(i)(Cambridge Crystallographic Data Centre, 2020-11-27) [Dataset]
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CCDC 1044413: Experimental Crystal Structure Determination : (mu-4,4'-[[1,1'-binaphthalene]-2,2'-diylbis(oxymethylene)]bis{3-ethyl-1-[5-methyl-2-(propan-2-yl)cyclohexyl]-1H-1,2,3-triazol-5-ylidene})-dichloro-di-silver(i) acetonitrile unknown solvate(Cambridge Crystallographic Data Centre, 2020-11-27) [Dataset]
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CCDC 1941208: Experimental Crystal Structure Determination(Cambridge Crystallographic Data Centre, 2020-11-26) [Dataset]
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CCDC 1941207: Experimental Crystal Structure Determination(Cambridge Crystallographic Data Centre, 2020-11-26) [Dataset]
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CCDC 2011034: Experimental Crystal Structure Determination : catena-(bis(mu-hydroxo)-tris(mu-12,16,32,36-tetramethyl[11,21:23,31-terphenyl]-14,34-dicarboxylato)-bis(mu-oxo)-tri-zirconium dimethylformamide solvate)(Cambridge Crystallographic Data Centre, 2020-11-24) [Dataset]