Cross species amplification ability of novel microsatellites isolated from Jatropha curcas and genetic relationship with sister taxa : Cross species amplification and genetic relationship of Jatropha using novel microsatellites
AuthorsPamidimarri, D. V N N Sudheer
Mastan, Shaik G.
Ravi Prakash, Ch
Singh, Sweta V.
Reddy, Muppala P.
KAUST DepartmentDesert Agriculture Initiative
Biological and Environmental Sciences and Engineering (BESE) Division
Online Publication Date2010-07-30
Print Publication Date2011-02
Permanent link to this recordhttp://hdl.handle.net/10754/561625
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AbstractThe present investigation was undertaken with an aim to check the ability of cross species amplification of microsatellite markers isolated from Jatropha curcas-a renewable source of biodiesel to deduce the generic relationship with its six sister taxa (J. glandulifera, J. gossypifolia, J. integerrima, J. multifida, J. podagrica, and J. tanjorensis). Out of the 49 markers checked 31 markers showed cross species amplification in all the species studied. JCDS-30, JCDS-69, JCDS-26, JCMS-13 and JCMS-21 amplified in J. curcas. However, these markers did not show any cross species amplification. Overall percentage of polymorphism (PP) among the species studied was 38% and the mean genetic similarity (GS) was found to be 0.86. The highest PP (24) and least GS (0.76) was found between J. curcas/J. podagrica and J. curcas/J. multifida and least PP (4.44) and highest GS (0.96) was found between J. integerrima/J. tanjorensis. Dendrogram analysis showed good congruence to RAPD and AFLP than nrDNA ITS data reported earlier. The characterized microsatellites will pave way for intraspecies molecular characterization which can be further utilized in species differentiation, molecular identification, characterization of interspecific hybrids, exploitation of genetic resource management and genetic improvement of the species through marker assisted breeding for economically important traits. © 2010 Springer Science+Business Media B.V.
CitationSudheer, P. D. V. N., Mastan, S. G., Rahman, H., Ravi Prakash, C., Singh, S., & Reddy, M. P. (2010). Cross species amplification ability of novel microsatellites isolated from Jatropha curcas and genetic relationship with sister taxa. Molecular Biology Reports, 38(2), 1383–1388. doi:10.1007/s11033-010-0241-9
SponsorsWe are thankful to Council for Scientific and Industrial Research, New Delhi, India for its financial support and for research associate fellowship.
JournalMolecular Biology Reports
- Comparative study of interspecific genetic divergence and phylogenic analysis of genus Jatropha by RAPD and AFLP: genetic divergence and phylogenic analysis of genus Jatropha.
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