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Recent Submissions

  • Latitudinal variation in monthly-scale reproductive synchrony among Acropora coral assemblages in the Indo-Pacific

    Bouwmeester, Jessica; Edwards, Alasdair J.; Guest, James R.; Bauman, Andrew G.; Berumen, Michael L.; Baird, Andrew H. (Coral Reefs, Springer Science and Business Media LLC, 2021-06-15) [Article]
    Early research into coral reproductive biology suggested that spawning synchrony was driven by variations in the amplitude of environmental variables that are correlated with latitude, with synchrony predicted to break down at lower latitudes. More recent research has revealed that synchronous spawning, both within and among species, is a feature of all speciose coral assemblages, including equatorial reefs. Nonetheless, considerable variation in reproductive synchrony exists among locations and the hypothesis that the extent of spawning synchrony is correlated with latitude has not been formally tested on a large scale. Here, we use data from 90 sites throughout the Indo-Pacific and a quantitative index of reproductive synchrony applied at a monthly scale to demonstrate that, despite considerable spatial and temporal variation, there is no correlation between latitude and reproductive synchrony. Considering the critical role that successful reproduction plays in the persistence and recovery of coral reefs, research is urgently needed to understand the drivers underpinning variation in reproductive synchrony
  • Latitudinal variation in monthly-scale reproductive synchrony among Acropora coral assemblages in the Indo-Pacific

    Bouwmeester, Jessica; Edwards, Alasdair J.; Guest, James R.; Bauman, Andrew G.; Berumen, Michael L.; Baird, Andrew H. (Coral Reefs, Springer Science and Business Media LLC, 2021-06-15) [Article]
    Early research into coral reproductive biology suggested that spawning synchrony was driven by variations in the amplitude of environmental variables that are correlated with latitude, with synchrony predicted to break down at lower latitudes. More recent research has revealed that synchronous spawning, both within and among species, is a feature of all speciose coral assemblages, including equatorial reefs. Nonetheless, considerable variation in reproductive synchrony exists among locations and the hypothesis that the extent of spawning synchrony is correlated with latitude has not been formally tested on a large scale. Here, we use data from 90 sites throughout the Indo-Pacific and a quantitative index of reproductive synchrony applied at a monthly scale to demonstrate that, despite considerable spatial and temporal variation, there is no correlation between latitude and reproductive synchrony. Considering the critical role that successful reproduction plays in the persistence and recovery of coral reefs, research is urgently needed to understand the drivers underpinning variation in reproductive synchrony
  • Nutrient and temperature constraints on primary production and net phytoplankton growth in a tropical ecosystem

    López-Sandoval, Daffne C.; Duarte, Carlos M.; Agusti, Susana (Limnology and Oceanography, Wiley, 2021-06-12) [Article]
    The Red Sea depicts a north–south gradient of positively correlated temperature and nutrient concentration. Despite its overall oligotrophic characteristics, primary production rates in the Red Sea vary considerably. In this study, based on five cruises and a 2-year time series (2016–2018) sampling in the Central Red Sea, we determined phytoplankton photosynthetic rates (PP) by using 13C as a tracer and derived phytoplankton net growth rates (μ) and chlorophyll a (Chl a)-normalized photosynthesis (PB). Our results indicate a ninefold variation (14–125 mgC m−2 h−1) in depth-integrated primary production and reveal a marked seasonality in PP, PB, and μ. Depth-integrated PP remained <30 mg C m−2 h−1 during spring and summer, and peaked in autumn–winter, particularly in the southernmost stations (~17°N). In surface waters, phytoplankton grew at a slow rate (0.2 ± 0.02 d−1), with the population doubling every 3.5 days, on average. However, during the autumn–winter period, when Chl a concentrations peaked in the central and southern regions, μ increased to values between 0.60 and 0.84 d−1, while PB reached its maximum rate (7.8 mgC [mg Chl a]−1 h−1). We used path analysis to resolve direct vs. indirect components between correlations. Our results show that nutrient availability modulates the photosynthetic performance and growth of phytoplankton communities and that PB and μ fluctuations are not directly associated with temperature changes. Our study suggests that similarly to other oligotrophic warm seas, phosphorus concentration exerts a key role in defining photosynthetic rates and the biomass levels of phytoplankton communities in the region.
  • Moderate Seasonal Dynamics Indicate an Important Role for Lysogeny in the Red Sea

    Abdulrahman Ashy, Ruba; Suttle, Curtis A.; Agusti, Susana (Microorganisms, MDPI AG, 2021-06-11) [Article]
    Viruses are the most abundant microorganisms in marine environments and viral infections can be either lytic (virulent) or lysogenic (temperate phage) within the host cell. The aim of this study was to quantify viral dynamics (abundance and infection) in the coastal Red Sea, a narrow oligotrophic basin with high surface water temperatures (22–32 °C degrees), high salinity (37.5–41) and continuous high insolation, thus making it a stable and relatively unexplored environment. We quantified viral and environmental changes in the Red Sea (two years) and the occurrence of lysogenic bacteria (induced by mitomycin C) on the second year. Water temperatures ranged from 24.0 to 32.5 °C, and total viral and bacterial abundances ranged from 1.5 to 8.7 × 106 viruses mL−1 and 1.9 to 3.2 × 105 bacteria mL−1, respectively. On average, 12.24% ± 4.8 (SE) of the prophage bacteria could be induced by mitomycin C, with the highest percentage of 55.8% observed in January 2018 when bacterial abundances were low; whereas no induction was measurable in spring when bacterial abundances were highest. Thus, despite the fact that the Red Sea might be perceived as stable, warm and saline, relatively modest changes in seasonal conditions were associated with large swings in the prevalence of lysogeny.
  • A new Lagrangian-based short-term prediction methodology for high-frequency (HF) radar currents

    Solabarrieta, Lohitzune; Hernández-Carrasco, Ismael; Rubio, Anna; Campbell, Michael F; Esnaola, Ganix; Mader, Julien; Jones, Burton; Orfila, Alejandro (Ocean Science, Copernicus GmbH, 2021-06-04) [Article]
    Abstract. The use of high-frequency radar (HFR) data is increasing worldwide for different applications in the field of operational oceanography and data assimilation, as it provides real-time coastal surface currents at high temporal and spatial resolution. In this work, a Lagrangian-based, empirical, real-time, short-term prediction (L-STP) system is presented in order to provide short-term forecasts of up to 48 h of ocean currents. The method is based on finding historical analogs of Lagrangian trajectories obtained from HFR surface currents. Then, assuming that the present state will follow the same temporal evolution as the historical analog, we perform the forecast. The method is applied to two HFR systems covering two areas with different dynamical characteristics: the southeast Bay of Biscay and the central Red Sea. A comparison of the L-STP methodology with predictions based on persistence and reference fields is performed in order to quantify the error introduced by this approach. Furthermore, a sensitivity analysis has been conducted to determine the limit of applicability of the methodology regarding the temporal horizon of Lagrangian prediction. A real-time skill score has been developed using the results of this analysis, which allows for the identification of periods when the short-term prediction performance is more likely to be low, and persistence can be used as a better predictor for the future currents.
  • Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs

    El-Khaled, Yusuf C.; Roth, Florian; Radecker, Nils; Tilstra, Arjen; Karcher, Denis B.; Kürten, Benjamin; Jones, Burton; Voolstra, Christian R.; Wild, Christian (Scientific Reports, Springer Science and Business Media LLC, 2021-06-03) [Article]
    AbstractCoral reefs experience phase shifts from coral- to algae-dominated benthic communities, which could affect the interplay between processes introducing and removing bioavailable nitrogen. However, the magnitude of such processes, i.e., dinitrogen (N2) fixation and denitrification levels, and their responses to phase shifts remain unknown in coral reefs. We assessed both processes for the dominant species of six benthic categories (hard corals, soft corals, turf algae, coral rubble, biogenic rock, and reef sands) accounting for > 98% of the benthic cover of a central Red Sea coral reef. Rates were extrapolated to the relative benthic cover of the studied organisms in co-occurring coral- and algae-dominated areas of the same reef. In general, benthic categories with high N2 fixation exhibited low denitrification activity. Extrapolated to the respective reef area, turf algae and coral rubble accounted for > 90% of overall N2 fixation, whereas corals contributed to more than half of reef denitrification. Total N2 fixation was twice as high in algae- compared to coral-dominated areas, whereas denitrification levels were similar. We conclude that algae-dominated reefs promote new nitrogen input through enhanced N2 fixation and comparatively low denitrification. The subsequent increased nitrogen availability could support net productivity, resulting in a positive feedback loop that increases the competitive advantage of algae over corals in reefs that experienced a phase shift.
  • Relative abundance of nitrogen cycling microbes in coral holobionts reflects environmental nitrate availability

    Tilstra, Arjen; Roth, Florian; El-Khaled, Yusuf C.; Pogoreutz, Claudia; Rädecker, Nils; Voolstra, Christian R.; Wild, Christian (Royal Society Open Science, The Royal Society, 2021-06-02) [Article]
    Recent research suggests that nitrogen (N) cycling microbes are important for coral holobiont functioning. In particular, coral holobionts may acquire bioavailable N via prokaryotic dinitrogen (N2) fixation or remove excess N via denitrification activity. However, our understanding of environmental drivers on these processes in hospite remains limited. Employing the strong seasonality of the central Red Sea, this study assessed the effects of environmental parameters on the proportional abundances of N cycling microbes associated with the hard corals Acropora hemprichii and Stylophora pistillata. Specifically, we quantified changes in the relative ratio between nirS and nifH gene copy numbers, as a proxy for seasonal shifts in denitrification and N2 fixation potential in corals, respectively. In addition, we assessed coral tissue-associated Symbiodiniaceae cell densities and monitored environmental parameters to provide a holobiont and environmental context, respectively. While ratios of nirS to nifH gene copy numbers varied between seasons, they revealed similar seasonal patterns in both coral species, with ratios closely following patterns in environmental nitrate availability. Symbiodiniaceae cell densities aligned with environmental nitrate availability, suggesting that the seasonal shifts in nirS to nifH gene abundance ratios were probably driven by nitrate availability in the coral holobiont. Thereby, our results suggest that N cycling in coral holobionts probably adjusts to environmental conditions by increasing and/or decreasing denitrification and N2 fixation potential according to environmental nitrate availability. Microbial N cycling may, thus, extenuate the effects of changes in environmental nitrate availability on coral holobionts to support the maintenance of the coral–Symbiodiniaceae symbiosis.
  • KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data

    Alam, Intikhab; Kamau, Allan; Ngugi, David Kamanda; Gojobori, Takashi; Duarte, Carlos M.; Bajic, Vladimir B. (Scientific Reports, Springer Science and Business Media LLC, 2021-06-01) [Article]
    AbstractExponential rise of metagenomics sequencing is delivering massive functional environmental genomics data. However, this also generates a procedural bottleneck for on-going re-analysis as reference databases grow and methods improve, and analyses need be updated for consistency, which require acceess to increasingly demanding bioinformatic and computational resources. Here, we present the KAUST Metagenomic Analysis Platform (KMAP), a new integrated open web-based tool for the comprehensive exploration of shotgun metagenomic data. We illustrate the capacities KMAP provides through the re-assembly of ~ 27,000 public metagenomic samples captured in ~ 450 studies sampled across ~ 77 diverse habitats. A small subset of these metagenomic assemblies is used in this pilot study grouped into 36 new habitat-specific gene catalogs, all based on full-length (complete) genes. Extensive taxonomic and gene annotations are stored in Gene Information Tables (GITs), a simple tractable data integration format useful for analysis through command line or for database management. KMAP pilot study provides the exploration and comparison of microbial GITs across different habitats with over 275 million genes. KMAP access to data and analyses is available at https://www.cbrc.kaust.edu.sa/aamg/kmap.start.
  • Global COVID-19 lockdown highlights humans as both threats and custodians of the environment.

    Bates, Amanda E; Primack, Richard B; PAN-Environment Working Group; Duarte, Carlos M. (Biological conservation, Elsevier BV, 2021-05-26) [Article]
    The global lockdown to mitigate COVID-19 pandemic health risks has altered human interactions with nature. Here, we report immediate impacts of changes in human activities on wildlife and environmental threats during the early lockdown months of 2020, based on 877 qualitative reports and 332 quantitative assessments from 89 different studies. Hundreds of reports of unusual species observations from around the world suggest that animals quickly responded to the reductions in human presence. However, negative effects of lockdown on conservation also emerged, as confinement resulted in some park officials being unable to perform conservation, restoration and enforcement tasks, resulting in local increases in illegal activities such as hunting. Overall, there is a complex mixture of positive and negative effects of the pandemic lockdown on nature, all of which have the potential to lead to cascading responses which in turn impact wildlife and nature conservation. While the net effect of the lockdown will need to be assessed over years as data becomes available and persistent effects emerge, immediate responses were detected across the world. Thus initial qualitative and quantitative data arising from this serendipitous global quasi-experimental perturbation highlights the dual role that humans play in threatening and protecting species and ecosystems. Pathways to favorably tilt this delicate balance include reducing impacts and increasing conservation effectiveness.
  • Phytoplankton Biomass and the Hydrodynamic Regime in NEOM, Red Sea

    Papagiannopoulos, Nikolaos; Raitsos, Dionysios E.; Krokos, Georgios; Gittings, John; Brewin, Robert J. W.; Papadopoulos, Vassilis P.; Pavlidou, Alexandra; Selmes, Nick; Groom, Steve; Hoteit, Ibrahim (Remote Sensing, MDPI AG, 2021-05-25) [Article]
    NEOM (short for Neo-Mustaqbal) is a $500 billion coastal city megaproject, currently under construction in the northwestern part of the Red Sea, off the coast of Tabuk province in Saudi Arabia, and its success will rely on the preservation of biodiverse marine ecosystems. Monitoring the variability of ecological indicators, such as phytoplankton, in relation to regional environmental conditions, is the foundation for such a goal. We provide a detailed description of the phytoplankton seasonal cycle of surface waters surrounding NEOM using satellite-derived chlorophyll-a (Chl-a) observations, based on a regionally-tuned product of the European Space Agency’s Ocean Colour Climate Change Initiative, at 1 km resolution, from 1997 to 2018. The analysis is also supported with in situ cruise datasets and outputs of a state-of-the-art high-resolution hydrodynamic model. The open waters of NEOM follow the oligotrophic character of the Northern Red Sea (NRS), with a peak during late winter and a minimum during late summer. Coral reef-bound regions, such as Sindala and Sharma, are characterised by higher Chl-a concentrations that peak during late summer. Most of the open waters around NEOM are influenced by the general cyclonic circulation of the NRS and local circulation features, while shallow reef-bound regions are more isolated. Our analysis provides the first description of the phytoplankton seasonality and the oceanographic conditions in NEOM, which may support the development of a regional marine conservation strategy.
  • Global Plastic Pollution Observation System to Aid Policy

    Bank, Michael S.; Swarzenski, Peter W.; Duarte, Carlos M.; Rillig, Matthias C.; Koelmans, Albert A.; Metian, Marc; Wright, Stephanie; Provencher, Jennifer F.; Sanden, Monica; Jordaan, Adrian; Wagner, Martin; Thiel, Martin; Ok, Yong Sik (Environmental Science & Technology, American Chemical Society (ACS), 2021-05-24) [Article]
    Plastic pollution has become one of the most pressing environmental challenges and has received commensurate widespread attention. Although it is a top priority for policymakers and scientists alike, the knowledge required to guide decisions, implement mitigation actions, and assess their outcomes remains inadequate. We argue that an integrated, global monitoring system for plastic pollution is needed to provide comprehensive, harmonized data for environmental, societal, and economic assessments. The initial focus on marine ecosystems has been expanded here to include atmospheric transport and terrestrial and freshwater ecosystems. An earth-system-level plastic observation system is proposed as a hub for collecting and assessing the scale and impacts of plastic pollution across a wide array of particle sizes and ecosystems including air, land, water, and biota and to monitor progress toward ameliorating this problem. The proposed observation system strives to integrate new information and to identify pollution hotspots (i.e., production facilities, cities, roads, ports, etc.) and expands monitoring from marine environments to encompass all ecosystem types. Eventually, such a system will deliver knowledge to support public policy and corporate contributions to the relevant United Nations (UN) Sustainable Development Goals (SDGs).
  • A portfolio of climate-tailored approaches to advance the design of marine protected areas in the Red Sea

    Gajdzik, Laura; De Carlo, Thomas Mario; Aylagas, Eva; Coker, Darren James; Green, Alison Lesley; Majoris, John E.; Saderne, Vincent F.; Carvalho, Susana; Berumen, Michael L. (Global Change Biology, Wiley, 2021-05-22) [Article]
    Intensified coastal development is compromising the health and functioning of marine ecosystems. A key example of this is the Red Sea, a biodiversity hotspot subjected to increasing local human pressures. While some marine protected areas (MPAs) were placed to alleviate these stressors, it is unclear whether these MPAs are managed or enforced, thus providing limited protection. Yet, most importantly, MPAs in the Red Sea were not designed using climate considerations, which likely diminish their effectiveness against global stressors. Here, we propose to tailor the design of MPAs in the Red Sea by integrating approaches to enhance climate change mitigation and adaptation. First, including coral bleaching susceptibility could produce a more resilient network of MPAs by safeguarding reefs from different thermal regions that vary in spatiotemporal bleaching responses, reducing the risk that all protected reefs will bleach simultaneously. Second, preserving the mesoscale-eddy-assisted and basin-wide genetic connectivity patterns could further ensure recovery of sensitive populations and maintain species potential to adapt to environmental changes. Finally, protecting mangrove forests in the northern and southern Red Sea that act as major carbon sinks could help offset greenhouse gas emissions. If implemented with multinational cooperation and concerted effort among stakeholders, our portfolio of climate-tailored approaches may help build a network of MPAs in the Red Sea that protects more effectively its coastal resources against escalating coastal development and climate instability. Beyond the Red Sea, we anticipate this study to serve as an example of how to improve the utility of tropical MPAs as climate-informed conservation tools.
  • Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

    Acinas, Silvia G.; Sánchez, Pablo; Salazar, Guillem; Cornejo-Castillo, Francisco M.; Sebastián, Marta; Logares, Ramiro; Royo-Llonch, Marta; Paoli, Lucas; Sunagawa, Shinichi; Hingamp, Pascal; Ogata, Hiroyuki; Lima-Mendez, Gipsi; Roux, Simon; González, José M.; Arrieta, Jesús M.; Alam, Intikhab; Kamau, Allan; Bowler, Chris; Raes, Jeroen; Pesant, Stéphane; Bork, Peer; Agusti, Susana; Gojobori, Takashi; Vaqué, Dolors; Sullivan, Matthew B.; Pedrós-Alió, Carlos; Massana, Ramon; Duarte, Carlos M.; Gasol, Josep M. (Communications Biology, Springer Science and Business Media LLC, 2021-05-21) [Article]
    AbstractThe deep sea, the largest ocean’s compartment, drives planetary-scale biogeochemical cycling. Yet, the functional exploration of its microbial communities lags far behind other environments. Here we analyze 58 metagenomes from tropical and subtropical deep oceans to generate the Malaspina Gene Database. Free-living or particle-attached lifestyles drive functional differences in bathypelagic prokaryotic communities, regardless of their biogeography. Ammonia and CO oxidation pathways are enriched in the free-living microbial communities and dissimilatory nitrate reduction to ammonium and H2 oxidation pathways in the particle-attached, while the Calvin Benson-Bassham cycle is the most prevalent inorganic carbon fixation pathway in both size fractions. Reconstruction of the Malaspina Deep Metagenome-Assembled Genomes reveals unique non-cyanobacterial diazotrophic bacteria and chemolithoautotrophic prokaryotes. The widespread potential to grow both autotrophically and heterotrophically suggests that mixotrophy is an ecologically relevant trait in the deep ocean. These results expand our understanding of the functional microbial structure and metabolic capabilities of the largest Earth aquatic ecosystem.
  • Factors determining seagrass Blue Carbon across bioregions and geomorphologies

    Mazarrasa, Inés; Lavery, P. S.; Duarte, Carlos M.; Lafratta, Anna; Lovelock, Catherine E.; Macreadie, Peter I.; Samper-Villarreal, Jimena; Salinas, Cristian; Sanders, Christian; Trevathan-Tackett, Stacey M.; Young, Mary; Steven, Andy; Serrano, Oscar (Global Biogeochemical Cycles, American Geophysical Union (AGU), 2021-05-21) [Article]
    Seagrass meadows rank among the most significant organic carbon (Corg) sinks on earth. We examined the variability in seagrass soil Corg stocks and composition across Australia and identified the main drivers of variability, applying a spatially hierarchical approach that incorporates bioregions and geomorphic settings. Top 30 cm soil Corg stocks were similar across bioregions and geomorphic settings (min-max: 20–26 Mg Corg ha-1), but meadows formed by large species (i.e. Amphibolis spp. and Posidonia spp.) showed higher stocks (24–29 Mg Corg ha-1) than those formed by smaller species (e.g. Halodule, Halophila, Ruppia, Zostera, Cymodocea and Syringodium; 12–21 Mg Corg ha-1). In temperate coastal meadows dominated by large species, soil Corg stocks mainly derived from seagrass Corg (72± 2 %), while allochthonous Corg dominated soil Corg stocks in meadows formed by small species in temperate and tropical estuarine meadows (64 ± 5%). In temperate coastal meadows, soil Corg stocks were enhanced by low hydrodynamic exposure associated with high mud and seagrass Corg contents. In temperate estuarine meadows, soil Corg stocks were enhanced by high contributions of seagrass Corg, low to moderate solar radiation and low human pressure. In tropical estuarine meadows formed by small species, large soil Corg stocks were mainly associated with low hydrodynamic energy, low rainfall and high solar radiation. These results showcase that bioregion and geomorphic setting are not necessarily good predictors of soil Corg stocks and that site-specific estimates based on local environmental factors are needed for Blue Carbon projects and greenhouse gases accounting purposes.
  • Rise and fall of the global conversation and shifting sentiments during the COVID-19 pandemic

    Zhang, Xiangliang; Yang, Qiang; Albaradei, Somayah; Lyu, Xiaoting; Alamro, Hind; Salhi, Adil; Ma, Changsheng; Alshehri, Manal; Jaber, Inji Ibrahim; Tifratene, Faroug; Wang, Wei; Gojobori, Takashi; Duarte, Carlos M.; Gao, Xin (Humanities and Social Sciences Communications, Springer Science and Business Media LLC, 2021-05-17) [Article]
    AbstractSocial media (e.g., Twitter) has been an extremely popular tool for public health surveillance. The novel coronavirus disease 2019 (COVID-19) is the first pandemic experienced by a world connected through the internet. We analyzed 105+ million tweets collected between March 1 and May 15, 2020, and Weibo messages compiled between January 20 and May 15, 2020, covering six languages (English, Spanish, Arabic, French, Italian, and Chinese) and represented an estimated 2.4 billion citizens worldwide. To examine fine-grained emotions during a pandemic, we built machine learning classification models based on deep learning language models to identify emotions in social media conversations about COVID-19, including positive expressions (optimistic, thankful, and empathetic), negative expressions (pessimistic, anxious, sad, annoyed, and denial), and a complicated expression, joking, which has not been explored before. Our analysis indicates a rapid increase and a slow decline in the volume of social media conversations regarding the pandemic in all six languages. The upsurge was triggered by a combination of economic collapse and confinement measures across the regions to which all the six languages belonged except for Chinese, where only the latter drove conversations. Tweets in all analyzed languages conveyed remarkably similar emotional states as the epidemic was elevated to pandemic status, including feelings dominated by a mixture of joking with anxious/pessimistic/annoyed as the volume of conversation surged and shifted to a general increase in positive states (optimistic, thankful, and empathetic), the strongest being expressed in Arabic tweets, as the pandemic came under control.
  • High plasticity of nitrogen fixation and denitrification of common coral reef substrates in response to nitrate availability

    El-Khaled, Yusuf C.; Nafeh, Rassil; Roth, Florian; Radecker, Nils; Karcher, Denis B.; Jones, Burton; Voolstra, Christian R.; Wild, Christian (Marine Pollution Bulletin, Elsevier BV, 2021-05-14) [Article]
    Nitrogen cycling in coral reefs may be affected by nutrient availability, but knowledge about concentration-dependent thresholds that modulate dinitrogen fixation and denitrification is missing. We determined the effects of different nitrate concentrations (ambient, 1, 5, 10 μM nitrate addition) on both processes under two light scenarios (i.e., light and dark) using a combined acetylene assay for two common benthic reef substrates, i.e., turf algae and coral rubble. For both substrates, dinitrogen fixation rates peaked at 5 μM nitrate addition in light, whereas denitrification was highest at 10 μM nitrate addition in the dark. At 10 μm nitrate addition in the dark, a near-complete collapse of dinitrogen fixation concurrent with a 76-fold increase in denitrification observed for coral rubble, suggesting potential threshold responses linked to the nutritional state of the community. We conclude that dynamic nitrogen cycling activity may help stabilise nitrogen availability in microbial communities associated with coral reef substrates.
  • Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities

    Roth, Florian; El-Khaled, Yusuf C.; Karcher, Denis B.; Rädecker, Nils; Carvalho, Susana; Duarte, Carlos M.; Silva, Luis; Calleja, Maria Ll.; Morán, Xosé Anxelu G.; Jones, Burton H.; Voolstra, Christian R.; Wild, Christian (Marine Pollution Bulletin, Elsevier BV, 2021-05-10) [Article]
    Ecosystem services provided by coral reefs may be susceptible to the combined effects of benthic species shifts and anthropogenic nutrient pollution, but related field studies are scarce. We thus investigated in situ how dissolved inorganic nutrient enrichment, maintained for two months, affected community-wide biogeochemical functions of intact coral- and degraded algae-dominated reef patches in the central Red Sea. Results from benthic chamber incubations revealed 87% increased gross productivity and a shift from net calcification to dissolution in algae-dominated communities after nutrient enrichment, but the same processes were unaffected by nutrients in neighboring coral communities. Both community types changed from net dissolved organic nitrogen sinks to sources, but the increase in net release was 56% higher in algae-dominated communities. Nutrient pollution may, thus, amplify the effects of community shifts on key ecosystem services of coral reefs, possibly leading to a loss of structurally complex habitats with carbonate dissolution and altered nutrient recycling.
  • Temperature Responses of Heterotrophic Bacteria in Co-culture With a Red Sea Synechococcus Strain

    Labban, Abbrar; Palacio, Antonio S.; García, Francisca C.; Hadaidi, Ghaida A.; Ansari, Mohd Ikram; López-Urrutia, Ángel; Alonso-Sáez, Laura; Hong, Pei-Ying; Moran, Xose Anxelu G. (Frontiers in Microbiology, Frontiers Media SA, 2021-05-10) [Article]
    Interactions between autotrophic and heterotrophic bacteria are fundamental for marine biogeochemical cycling. How global warming will affect the dynamics of these essential microbial players is not fully understood. The aims of this study were to identify the major groups of heterotrophic bacteria present in a Synechococcus culture originally isolated from the Red Sea and assess their joint responses to experimental warming within the metabolic ecology framework. A co-culture of Synechococcus sp. RS9907 and their associated heterotrophic bacteria, after determining their taxonomic affiliation by 16S rRNA gene sequencing, was acclimated and maintained in the lab at different temperatures (24–34°C). The abundance and cellular properties of Synechococcus and the three dominant heterotrophic bacterial groups (pertaining to the genera Paracoccus, Marinobacter, and Muricauda) were monitored by flow cytometry. The activation energy of Synechococcus, which grew at 0.94–1.38 d–1, was very similar (0.34 ± 0.02 eV) to the value hypothesized by the metabolic theory of ecology (MTE) for autotrophs (0.32 eV), while the values of the three heterotrophic bacteria ranged from 0.16 to 1.15 eV and were negatively correlated with their corresponding specific growth rates (2.38–24.4 d–1). The corresponding carrying capacities did not always follow the inverse relationship with temperature predicted by MTE, nor did we observe a consistent response of bacterial cell size and temperature. Our results show that the responses to future ocean warming of autotrophic and heterotrophic bacteria in microbial consortia might not be well described by theoretical universal rules.
  • Diversity and Sources of Airborne Eukaryotic Communities (AEC) in the Global Dust Belt over the Red Sea

    Aalismail, Nojood; Diaz Rua, Ruben; Geraldi, Nathan; Cusack, Michael; Duarte, Carlos M. (Earth Systems and Environment, Springer Science and Business Media LLC, 2021-05-08) [Article]
    Airborne eukaryotic communities (AEC), rank among the least studied aerobiological components, despite their adverse impacts on human health and the environment. Here, we describe the AECs in the global dust belt, the area between the west coast of North Africa and Central Asia, which supports the highest dust fluxes on the planet. We sampled atmospheric dust over 14 months (fall 2015–fall 2016) from onshore and offshore locations of the Red Sea, the only waterbody that entirely encompassed in the global dust belt. We also sampled surface water samples to determine the potential transfer of taxa across the air-sea interface. To target the eukaryotes, we performed Miseq sequencing of atmospheric dust and surface water samples. Analysis of amplicon sequencing indicates a total pool of 18,816 sequence variants (SVs). Among 33 unique eukaryotic phyla in the AEC over the Red Sea, the most dominant taxa were Streptophyta, Apicomplexa, and Ascomycota. Aerosol eukaryotes originated from various sources and formed more diverse communities than eukaryotic communities of the Red Sea surface water. AECs were dominated by phylotypes released from plant material and soils, and including taxa reported to be harmful to human health. The AEC composition was significantly influenced by sampling locations and seasonal conditions but not by the origin of the air masses nor dust loads. This work is original and uses state-of-the-art methods and very powerful NGS- bioinformatics and statistical approaches. The selected study site has high interest and it has been well chosen because of the unique combination of high loads of dust deposition, being the only fully contained seawater body in the area acting as a sink for the atmospheric dust, and the lack of riverine inputs and watershed effects empathizing the role of atmospheric inputs in the ecology of the system.
  • Activity of loggerhead turtles during the U-shaped dive: insights using angular velocity metrics

    Gunner, RM; Wilson, RP; Holton, MD; Scott, R; Arkwright, A; Fahlman, A; Ulrich, M; Hopkins, P; Duarte, Carlos M.; Eizaguirre, C (Endangered Species Research, Inter-Research Science Center, 2021-05-06) [Article]
    Understanding the behavioural ecology of endangered taxa can inform conservation strategies. The activity budgets of the loggerhead turtle Caretta caretta are still poorly understood because many tracking methods show only horizontal displacement and ignore dives and associated behaviours. However, time-depth recorders have enabled researchers to identify flat, U-shaped dives (or type 1a dives) and these are conventionally labelled as resting dives on the seabed because they involve no vertical displacement of the animal. Video- and acceleration-based studies have demonstrated this is not always true. Focusing on sea turtles nesting on the Cabo Verde archipelago, we describe a new metric derived from magnetometer data, absolute angular velocity, that integrates indices of angular rotation in the horizontal plane to infer activity. Using this metric, we evaluated the variation in putative resting behaviours during the bottom phase of type 1a dives for 5 individuals over 13 to 17 d at sea during a single inter-nesting interval (over 75 turtle d in total). We defined absolute resting within the bottom phase of type 1a dives as periods with no discernible acceleration or angular movement. Whilst absolute resting constituted a significant proportion of each turtle’s time budget for this 1a dive type, turtles allocated 16-38% of their bottom time to activity, with many dives being episodic, comprised of intermittent bouts of rest and rotational activity. This implies that previously considered resting behaviours are complex and need to be accounted for in energy budgets, particularly since energy budgets may impact conservation strategies.

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