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Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.)

dc.contributor.authorBanguera Hinestroza, Eulalia
dc.contributor.authorSaenz Agudelo, Pablo
dc.contributor.authorBayer, Till
dc.contributor.authorBerumen, Michael L.
dc.contributor.authorVoolstra, Christian R.
dc.date.accessioned2014-11-11T14:33:36Z
dc.date.available2014-11-11T14:33:36Z
dc.date.issued2013-01-09
dc.identifier.citationBanguera-Hinestroza E, Saenz-Agudelo P, Bayer T, Berumen ML, Voolstra CR (2013) Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.). Conservation Genet Resour 5: 561-563. doi:10.1007/s12686-012-9852-x.
dc.identifier.issn18777252
dc.identifier.doi10.1007/s12686-012-9852-x
dc.identifier.urihttp://hdl.handle.net/10754/334649
dc.description.abstractA total of one hundred microsatellites loci were selected from the draft genome of Stylophora pistillata and evaluated in previously characterized samples of Stylophora cf pistillata from the Red Sea. 17 loci were amplified successfully and tested in 24 individuals from samples belonging to a single population from the central region of the Red Sea. The number of alleles ranged from 3 to 15 alleles per locus, while observed heterozygosity ranged from 0. 292 to 0. 95. Six of these loci showed significant deviations from Hardy-Weinberg equilibrium (HWE) expectations, and 4/136 paired loci comparisons suggested linkage disequilibrium after Bonferroni corrections. After excluding loci with significant HWE deviation and evidence of null alleles, average genetic diversity over loci in the population studied (N = 24, Nloci = 11) was 0. 701 ± 0. 380. This indicates that these loci can be used effectively to evaluate genetic diversity and undertake population genetics studies in Stylophora sp. populations. 2013 The Author(s).
dc.language.isoen
dc.publisherSpringer Nature
dc.rightsThis is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
dc.rightsArchived with thanks to Conservation Genetics Resources
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/
dc.subjectCoral
dc.subjectRed Sea
dc.subjectStylophora
dc.subjectTetra and dinucleotide microsatellites
dc.subjectAnthozoa
dc.subjectBrassica oleracea var. botrytis
dc.subjectStylophora (coral)
dc.subjectStylophora pistillata
dc.subjectTetra
dc.titleCharacterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.)
dc.typeArticle
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Division
dc.contributor.departmentMarine Science Program
dc.contributor.departmentRed Sea Research Center (RSRC)
dc.contributor.departmentReef Ecology Lab
dc.contributor.departmentReef Genomics Lab
dc.identifier.journalConservation Genetics Resources
dc.eprint.versionPublisher's Version/PDF
dc.contributor.institutionBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, United States
dc.contributor.affiliationKing Abdullah University of Science and Technology (KAUST)
kaust.personSaenz Agudelo, Pablo
kaust.personBayer, Till
kaust.personBerumen, Michael L.
kaust.personVoolstra, Christian R.
kaust.personBanguera Hinestroza, Eulalia
refterms.dateFOA2018-06-13T16:03:04Z
dc.date.published-online2013-01-09
dc.date.published-print2013-06


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This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
Except where otherwise noted, this item's license is described as This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.