Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.)
dc.contributor.author | Banguera Hinestroza, Eulalia | |
dc.contributor.author | Saenz Agudelo, Pablo | |
dc.contributor.author | Bayer, Till | |
dc.contributor.author | Berumen, Michael L. | |
dc.contributor.author | Voolstra, Christian R. | |
dc.date.accessioned | 2014-11-11T14:33:36Z | |
dc.date.available | 2014-11-11T14:33:36Z | |
dc.date.issued | 2013-01-09 | |
dc.identifier.citation | Banguera-Hinestroza E, Saenz-Agudelo P, Bayer T, Berumen ML, Voolstra CR (2013) Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.). Conservation Genet Resour 5: 561-563. doi:10.1007/s12686-012-9852-x. | |
dc.identifier.issn | 18777252 | |
dc.identifier.doi | 10.1007/s12686-012-9852-x | |
dc.identifier.uri | http://hdl.handle.net/10754/334649 | |
dc.description.abstract | A total of one hundred microsatellites loci were selected from the draft genome of Stylophora pistillata and evaluated in previously characterized samples of Stylophora cf pistillata from the Red Sea. 17 loci were amplified successfully and tested in 24 individuals from samples belonging to a single population from the central region of the Red Sea. The number of alleles ranged from 3 to 15 alleles per locus, while observed heterozygosity ranged from 0. 292 to 0. 95. Six of these loci showed significant deviations from Hardy-Weinberg equilibrium (HWE) expectations, and 4/136 paired loci comparisons suggested linkage disequilibrium after Bonferroni corrections. After excluding loci with significant HWE deviation and evidence of null alleles, average genetic diversity over loci in the population studied (N = 24, Nloci = 11) was 0. 701 ± 0. 380. This indicates that these loci can be used effectively to evaluate genetic diversity and undertake population genetics studies in Stylophora sp. populations. 2013 The Author(s). | |
dc.language.iso | en | |
dc.publisher | Springer Nature | |
dc.rights | This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. | |
dc.rights | Archived with thanks to Conservation Genetics Resources | |
dc.rights.uri | http://creativecommons.org/licenses/by/3.0/ | |
dc.subject | Coral | |
dc.subject | Red Sea | |
dc.subject | Stylophora | |
dc.subject | Tetra and dinucleotide microsatellites | |
dc.subject | Anthozoa | |
dc.subject | Brassica oleracea var. botrytis | |
dc.subject | Stylophora (coral) | |
dc.subject | Stylophora pistillata | |
dc.subject | Tetra | |
dc.title | Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.) | |
dc.type | Article | |
dc.contributor.department | Biological and Environmental Sciences and Engineering (BESE) Division | |
dc.contributor.department | Marine Science Program | |
dc.contributor.department | Red Sea Research Center (RSRC) | |
dc.contributor.department | Reef Ecology Lab | |
dc.contributor.department | Reef Genomics Lab | |
dc.identifier.journal | Conservation Genetics Resources | |
dc.eprint.version | Publisher's Version/PDF | |
dc.contributor.institution | Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, United States | |
dc.contributor.affiliation | King Abdullah University of Science and Technology (KAUST) | |
kaust.person | Saenz Agudelo, Pablo | |
kaust.person | Bayer, Till | |
kaust.person | Berumen, Michael L. | |
kaust.person | Voolstra, Christian R. | |
kaust.person | Banguera Hinestroza, Eulalia | |
refterms.dateFOA | 2018-06-13T16:03:04Z | |
dc.date.published-online | 2013-01-09 | |
dc.date.published-print | 2013-06 |
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Red Sea Research Center (RSRC)
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Reef Genomics, part of the Global Ocean Genome Project