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Tucker Tensor analysis of Matern functions in spatial statistics(20180309)In this work, we describe advanced numerical tools for working with multivariate functions and for the analysis of large data sets. These tools will drastically reduce the required computing time and the storage cost, and, therefore, will allow us to consider much larger data sets or finer meshes. Covariance matrices are crucial in spatiotemporal statistical tasks, but are often very expensive to compute and store, especially in 3D. Therefore, we approximate covariance functions by cheap surrogates in a lowrank tensor format. We apply the Tucker and canonical tensor decompositions to a family of Matern and Slatertype functions with varying parameters and demonstrate numerically that their approximations exhibit exponentially fast convergence. We prove the exponential convergence of the Tucker and canonical approximations in tensor rank parameters. Several statistical operations are performed in this lowrank tensor format, including evaluating the conditional covariance matrix, spatially averaged estimation variance, computing a quadratic form, determinant, trace, loglikelihood, inverse, and Cholesky decomposition of a large covariance matrix. Lowrank tensor approximations reduce the computing and storage costs essentially. For example, the storage cost is reduced from an exponential O(n^d) to a linear scaling O(drn), where d is the spatial dimension, n is the number of mesh points in one direction, and r is the tensor rank. Prerequisites for applicability of the proposed techniques are the assumptions that the data, locations, and measurements lie on a tensor (axesparallel) grid and that the covariance function depends on a distance, xy.

Exploiting Data Sparsity for LargeScale Matrix Computations(20180224)Exploiting data sparsity in dense matrices is an algorithmic bridge between architectures that are increasingly memoryaustere on a percore basis and extremescale applications. The Hierarchical matrix Computations on Manycore Architectures (HiCMA) library tackles this challenging problem by achieving significant reductions in time to solution and memory footprint, while preserving a specified accuracy requirement of the application. HiCMA provides a highperformance implementation on distributedmemory systems of one of the most widely used matrix factorization in largescale scientific applications, i.e., the Cholesky factorization. It employs the tile lowrank data format to compress the dense datasparse offdiagonal tiles of the matrix. It then decomposes the matrix computations into interdependent tasks and relies on the dynamic runtime system StarPU for asynchronous outoforder scheduling, while allowing high userproductivity. Performance comparisons and memory footprint on matrix dimensions up to eleven million show a performance gain and memory saving of more than an order of magnitude for both metrics on thousands of cores, against stateoftheart opensource and vendor optimized numerical libraries. This represents an important milestone in enabling largescale matrix computations toward solving big data problems in geospatial statistics for climate/weather forecasting applications.

Batched Tile LowRank GEMM on GPUs(201802)Dense General MatrixMatrix (GEMM) multiplication is a core operation of the Basic Linear Algebra Subroutines (BLAS) library, and therefore, often resides at the bottom of the traditional software stack for most of the scientific applications. In fact, chip manufacturers give a special attention to the GEMM kernel implementation since this is exactly where most of the highperformance software libraries extract the hardware performance. With the emergence of big data applications involving large datasparse, hierarchically lowrank matrices, the offdiagonal tiles can be compressed to reduce the algorithmic complexity and the memory footprint. The resulting tile lowrank (TLR) data format is composed of small data structures, which retains the most significant information for each tile. However, to operate on lowrank tiles, a new GEMM operation and its corresponding API have to be designed on GPUs so that it can exploit the data sparsity structure of the matrix while leveraging the underlying TLR compression format. The main idea consists in aggregating all operations onto a single kernel launch to compensate for their low arithmetic intensities and to mitigate the data transfer overhead on GPUs. The new TLR GEMM kernel outperforms the cuBLAS dense batched GEMM by more than an order of magnitude and creates new opportunities for TLR advance algorithms.

Borehole Tool for the Comprehensive Characterization of Hydratebearing Sediments(Office of Scientific and Technical Information (OSTI), 20180201)Reservoir characterization and simulation require reliable parameters to anticipate hydrate deposits responses and production rates. The acquisition of the required fundamental properties currently relies on wireline logging, pressure core testing, and/or laboratory observations of synthesized specimens, which are challenged by testing capabilities and innate sampling disturbances. The project reviews hydratebearing sediments, properties, and inherent sampling effects, albeit lessen with the developments in pressure core technology, in order to develop robust correlations with index parameters. The resulting information is incorporated into a tool for optimal field characterization and parameter selection with uncertainty analyses. Ultimately, the project develops a borehole tool for the comprehensive characterization of hydratebearing sediments at in situ, with the design recognizing past developments and characterization experience and benefited from the inspiration of nature and sensor miniaturization.

Extreme Computing for Extreme Adaptive Optics: the Key to Finding Life Outside our Solar System(2018)The realtime correction of telescopic images in the search for exoplanets is highly sensitive to atmospheric aberrations. The pseudo inverse algorithm is an efficient mathematical method to filter out these turbulences. We introduce a new partial singular value decomposition (SVD) algorithm based on QRbased Diagonally Weighted Halley (QDWH) iteration for the pseudoinverse method of adaptive optics. The QDWH partial SVD algorithm selectively calculates the most significant singular values and their corresponding singular vectors. We develop a high performance implementation and demonstrate the numerical robustness of the QDWHbased partial SVD method. We also perform a benchmarking campaign on various generations of GPU hardware accelerators and compare against the stateoftheart SVD implementation SGESDD from the MAGMA library. Numerical accuracy and performance results are reported using synthetic and real observational datasets from the Subaru telescope. Our implementation outperforms SGESDD by up to fivefold and fourfold performance speedups on illconditioned synthetic matrices and real observational datasets, respectively. The pseudoinverse simulation code will be deployed onsky for the Subaru telescope during observation nights scheduled early 2018.

Performance Impact of RankReordering on Advanced Polar Decomposition Algorithms(2018)We demonstrate the importance of both MPI rank reordering and choice of processor grid topology in the context of advanced dense linear algebra (DLA) applications for distributedmemory systems. In particular, we focus on the advanced polar decomposition (PD) algorithm, based on the QRbased Dynamically Weighted Halley method (QDWH). The QDWH algorithm may be used as the first computational step toward solving symmetric eigenvalue problems and the singular value decomposition. Sukkari et al. (ACM TOMS, 2017) have shown that QDWH may benefit from rectangular instead of square processor grid topologies, which directly impact the performance of the underlying ScaLAPACK algorithms. In this work, we experiment an extensive combination of grid topologies and rank reorderings for different matrix sizes and number of nodes, and use QDWH as a proxy for advanced computebound linear algebra operations, since it is rich in dense linear solvers and factorizations. A performance improvement of up to 54% can be observed for QDWH on 800 nodes of a Cray XC system, thanks to an optimal combination, especially in strong scaling mode of operation, for which communication overheads may become dominant. We perform a thorough application profiling to analyze the impact of reordering and grid topologies on the various linear algebra components of the QDWH algorithm. It turns out that point topoint communications may be considerably reduced thanks to a judicious choice of grid topology, while properly setting the rank reordering using the features from the craympich library.

Ubiquitous Asynchronous Computations for Solving the Acoustic Wave Propagation Equation(2018)This paper designs and implements an ubiquitous asynchronous computational scheme for solving the acoustic wave propagation equation with Absorbing Boundary Conditions (ABCs) in the context of seismic imaging applications. While the Convolutional Perfectly Matched Layer (CPML) is typically used as ABCs in the oil and gas industry, its formulation further stresses memory accesses and decreases the arithmetic intensity at the physical domain boundaries. The challenges with CPML are twofold: (1) the strong, inherent data dependencies imposed on the explicit time stepping scheme render asynchronous time integration cumbersome and (2) the idle time is further exacerbated by the load imbalance introduced among processing units. In fact, the CPML formulation of the ABCs requires expensive synchronization points, which may hinder parallel performance of the overall asynchronous time integration. In particular, when deployed in conjunction with the Multicoreoptimized Wavefront Diamond (MWD) tiling approach for the inner domain points, it results into a major performance slow down. To relax CPML’s synchrony and mitigate the resulting load imbalance, we embed CPML’s calculation into MWD’s inner loop and carry on the time integration with finegrained computations in an asynchronous, holistic way. This comes at the price of storing transient results to alleviate dependencies from critical data hazards, while maintaining the numerical accuracy of the original scheme. Performance results on various x86 architectures demonstrate the superiority of MWD with CPML against the standard spatial blocking. To our knowledge, this is the first practical study, which highlights the consolidation of CPML ABCs with asynchronous temporal blocking stencil computations.

HLIBCov: Parallel Hierarchical Matrix Approximation of Large Covariance Matrices and Likelihoods with Applications in Parameter Identification(20170926)The main goal of this article is to introduce the parallel hierarchical matrix library HLIBpro to the statistical community. We describe the HLIBCov package, which is an extension of the HLIBpro library for approximating large covariance matrices and maximizing likelihood functions. We show that an approximate Cholesky factorization of a dense matrix of size $2M\times 2M$ can be computed on a modern multicore desktop in few minutes. Further, HLIBCov is used for estimating the unknown parameters such as the covariance length, variance and smoothness parameter of a Mat\'ern covariance function by maximizing the joint Gaussian loglikelihood function. The computational bottleneck here is expensive linear algebra arithmetics due to large and dense covariance matrices. Therefore covariance matrices are approximated in the hierarchical ($\H$) matrix format with computational cost $\mathcal{O}(k^2n \log^2 n/p)$ and storage $\mathcal{O}(kn \log n)$, where the rank $k$ is a small integer (typically $k<25$), $p$ the number of cores and $n$ the number of locations on a fairly general mesh. We demonstrate a synthetic example, where the true values of known parameters are known. For reproducibility we provide the C++ code, the documentation, and the synthetic data.

LowSNR Capacity of MIMO Optical Intensity Channels(20170918)The capacity of the multipleinput multipleoutput (MIMO) optical intensity channel is studied, under both average and peak intensity constraints. We focus on low SNR, which can be modeled as the scenario where both constraints proportionally vanish, or where the peak constraint is held constant while the average constraint vanishes. A capacity upper bound is derived, and is shown to be tight at low SNR under both scenarios. The capacity achieving input distribution at low SNR is shown to be a maximallycorrelated vectorbinary input distribution. Consequently, the lowSNR capacity of the channel is characterized. As a byproduct, it is shown that for a channel with peak intensity constraints only, or with peak intensity constraints and individual (per aperture) average intensity constraints, a simple scheme composed of coded onoff keying, spatial repetition, and maximumratio combining is optimal at low SNR.

Partial inversion of elliptic operator to speed up computation of likelihood in Bayesian inference(20170809)In this paper, we speed up the solution of inverse problems in Bayesian settings. By computing the likelihood, the most expensive part of the Bayesian formula, one compares the available measurement data with the simulated data. To get simulated data, repeated solution of the forward problem is required. This could be a great challenge. Often, the available measurement is a functional $F(u)$ of the solution $u$ or a small part of $u$. Typical examples of $F(u)$ are the solution in a point, solution on a coarser grid, in a small subdomain, the mean value in a subdomain. It is a waste of computational resources to evaluate, first, the whole solution and then compute a part of it. In this work, we compute the functional $F(u)$ direct, without computing the full inverse operator and without computing the whole solution $u$. The main ingredients of the developed approach are the hierarchical domain decomposition technique, the finite element method and the Schur complements. To speed up computations and to reduce the storage cost, we approximate the forward operator and the Schur complement in the hierarchical matrix format. Applying the hierarchical matrix technique, we reduced the computing cost to $\mathcal{O}(k^2n \log^2 n)$, where $k\ll n$ and $n$ is the number of degrees of freedom. Up to the $\H$matrix accuracy, the computation of the functional $F(u)$ is exact. To reduce the computational resources further, we can approximate $F(u)$ on, for instance, multiple coarse meshes. The offered method is well suited for solving multiscale problems. A disadvantage of this method is the assumption that one has to have access to the discretisation and to the procedure of assembling the Galerkin matrix.

Application of Bayesian Networks for Estimation of Individual Psychological Characteristics(20170719)In this paper we apply Bayesian networks for developing more accurate final overall estimations of psychological characteristics of an individual, based on psychological test results. Psychological tests which identify how much an individual possesses a certain factor are very popular and quite common in the modern world. We call this value for a given factor  the final overall estimation. Examples of factors could be stress resistance, the readiness to take a risk, the ability to concentrate on certain complicated work and many others. An accurate qualitative and comprehensive assessment of human potential is one of the most important challenges in any company or collective. The most common way of studying psychological characteristics of each single person is testing. Psychologists and sociologists are constantly working on improvement of the quality of their tests. Despite serious work, done by psychologists, the questions in tests often do not produce enough feedback due to the use of relatively poor estimation systems. The overall estimation is usually based on personal experiences and the subjective perception of a psychologist or a group of psychologists about the investigated psychological personality factors.

On the Optimality of Repetition Coding among Rate1 DCoffset STBCs for MIMO Optical Wireless Communications(20170706)In this paper, an optical wireless multipleinput multipleoutput communication system employing intensitymodulation directdetection is considered. The performance of direct current offset spacetime block codes (DCSTBC) is studied in terms of pairwise error probability (PEP). It is shown that among the class of DCSTBCs, the worst case PEP corresponding to the minimum distance between two codewords is minimized by repetition coding (RC), under both electrical and optical individual power constraints. It follows that among all DCSTBCs, RC is optimal in terms of worstcase PEP for static channels and also for varying channels under any turbulence statistics. This result agrees with previously published numerical results showing the superiority of RC in such systems. It also agrees with previously published analytic results on this topic under lognormal turbulence and further extends it to arbitrary turbulence statistics. This shows the redundancy of the timedimension of the DCSTBC in this system. This result is further extended to sum power constraints with static and turbulent channels, where it is also shown that the time dimension is redundant, and the optimal DCSTBC has a spatial beamforming structure. Numerical results are provided to demonstrate the difference in performance for systems with different numbers of receiving apertures and different throughput.

A QDWHBased SVD Software Framework on DistributedMemory Manycore Systems(2017)This paper presents a high performance software framework for computing a dense SVD on distributed memory manycore systems. Originally introduced by Nakatsukasa et al. (Nakatsukasa et al. 2010; Nakatsukasa and Higham 2013), the SVD solver relies on the polar decomposition using the QR DynamicallyWeighted Halley algorithm (QDWH). Although the QDWHbased SVD algorithm performs a significant amount of extra floatingpoint operations compared to the traditional SVD with the onestage bidiagonal reduction, the inherent high level of concurrency associated with Level 3 BLAS computebound kernels ultimately compensates for the arithmetic complexity overhead. Using the ScaLAPACK twodimensional block cyclic data distribution with a rectangular processor topology, the resulting QDWHSVD further reduces excessive communications during the panel factorization, while increasing the degree of parallelism during the update of the trailing submatrix, as opposed to relying to the default square processor grid. After detailing the algorithmic complexity and the memory footprint of the algorithm, we conduct a thorough performance analysis and study the impact of the grid topology on the performance by looking at the communication and computation profiling tradeoffs. We report performance results against stateoftheart existing QDWH software implementations (e.g., Elemental) and their SVD extensions on largescale distributedmemory manycore systems based on commodity Intel x86 Haswell processors and Knights Landing (KNL) architecture. The QDWHSVD framework achieves up to 3/8fold on the Haswell/KNLbased platforms, respectively, against ScaLAPACK PDGESVD and turns out to be a competitive alternative for well and illconditioned matrices. We finally come up herein with a performance model based on these empirical results. Our QDWHbased polar decomposition and its SVD extension are freely available at https://github.com/ecrc/qdwh.git and https://github.com/ecrc/ksvd.git, respectively, and have been integrated into the Cray Scientific numerical library LibSci v17.11.1.

Appendices for: Improper Signaling in TwoPath Relay Channels(20161201)This document contains the appendices for the work in “Improper Signaling in TwoPath Relay Channels,” which is submitted to 2017 IEEE International Conference on Communications (ICC) Workshop on FullDuplex Communications for Future Wireless Networks, Paris, France.

Asynchronous TaskBased Polar Decomposition on Manycore Architectures(20161025)This paper introduces the first asynchronous, taskbased implementation of the polar decomposition on manycore architectures. Based on a new formulation of the iterative QR dynamicallyweighted Halley algorithm (QDWH) for the calculation of the polar decomposition, the proposed implementation replaces the original and hostile LU factorization for the condition number estimator by the more adequate QR factorization to enable software portability across various architectures. Relying on finegrained computations, the novel taskbased implementation is also capable of taking advantage of the identity structure of the matrix involved during the QDWH iterations, which decreases the overall algorithmic complexity. Furthermore, the artifactual synchronization points have been severely weakened compared to previous implementations, unveiling lookahead opportunities for better hardware occupancy. The overall QDWHbased polar decomposition can then be represented as a directed acyclic graph (DAG), where nodes represent computational tasks and edges define the intertask data dependencies. The StarPU dynamic runtime system is employed to traverse the DAG, to track the various data dependencies and to asynchronously schedule the computational tasks on the underlying hardware resources, resulting in an outoforder task scheduling. Benchmarking experiments show significant improvements against existing stateoftheart high performance implementations (i.e., Intel MKL and Elemental) for the polar decomposition on latest sharedmemory vendors' systems (i.e., Intel Haswell/Broadwell/Knights Landing, NVIDIA K80/P100 GPUs and IBM Power8), while maintaining high numerical accuracy.

Efficient Outage Probability Evaluation of Diversity Receivers Over Generalized Gamma Channels(201610)In this paper, we are interested in determining the cumulative distribution function of the sum of generalized Gamma in the setting of rare event simulations. To this end, we present an efficient importance sampling estimator. The main result of this work is the bounded relative property of the proposed estimator. This result is used to accurately estimate the outage probability of multibranch maximum ratio combining and equal gain combining diversity receivers over generalized Gamma fading channels. Selected numerical simulations are discussed to show the robustness of our estimator compared to naive Monte Carlo.

On the Efficient Simulation of the Distribution of the Sum of GammaGamma Variates with Application to the Outage Probability Evaluation Over Fading Channels(201606)The GammaGamma distribution has recently emerged in a number of applications ranging from modeling scattering and reverbation in sonar and radar systems to modeling atmospheric turbulence in wireless optical channels. In this respect, assessing the outage probability achieved by some diversity techniques over this kind of channels is of major practical importance. In many circumstances, this is intimately related to the difficult question of analyzing the statistics of a sum of GammaGamma random variables. Answering this question is not a simple matter. This is essentially because outage probabilities encountered in practice are often very small, and hence the use of classical Monte Carlo methods is not a reasonable choice. This lies behind the main motivation of the present work. In particular, this paper proposes a new approach to estimate the left tail of the sum of GammaGamma variates. More specifically, we propose a meanshift importance sampling scheme that efficiently evaluates the outage probability of Lbranch maximum ratio combining diversity receivers over GammaGamma fading channels. The proposed estimator satisfies the wellknown bounded relative error criterion, a welldesired property characterizing the robustness of importance sampling schemes, for both identically and nonidentically independent distributed cases. We show the accuracy and the efficiency of our approach compared to naive Monte Carlo via some selected numerical simulations.

A novel mirror diversity receiver for indoor MIMO visible light(201603)In this paper, we propose and study a nonimaging receiver design reducing the correlation of channel matrix for indoor multipleinput multipleoutput (MIMO) visible light communication (VLC) systems. Contrary to previous works, our proposed mirror diversity receiver (MDR) not only blocks the reception of light on one specific direction but also improves the channel gain on the other direction by receiving the light reflected by a mirror deployed between the photodetectors. We analyze the channel capacity and optimal height of mirror in terms of maximum channel capacity for a 2 by2 MIMOVLC system in a 2dimensional geometric model.We prove that this constructive and destructive effects in channel matrix resulting from our proposed MDR are more beneficial to obtain wellconditioned channel matrix which is suitable for implementing spatialmultiplexing MIMOVLC systems in order to support high data rate.

Capacity Bounds for Parallel Optical Wireless Channels(201601)A system consisting of parallel optical wireless channels with a total average intensity constraint is studied. Capacity upper and lower bounds for this system are derived. Under perfect channelstate information at the transmitter (CSIT), the bounds have to be optimized with respect to the power allocation over the parallel channels. The optimization of the lower bound is nonconvex, however, the KKT conditions can be used to find a list of possible solutions one of which is optimal. The optimal solution can then be found by an exhaustive search algorithm, which is computationally expensive. To overcome this, we propose lowcomplexity power allocation algorithms which are nearly optimal. The optimized capacity lower bound nearly coincides with the capacity at high SNR. Without CSIT, our capacity bounds lead to upper and lower bounds on the outage probability. The outage probability bounds meet at high SNR. The system with average and peak intensity constraints is also discussed.