Adaptive Processing for Sequence Alignment
| dc.contributor.author | Zidan, Mohammed A. | |
| dc.contributor.author | Bonny, Talal | |
| dc.contributor.author | Salama, Khaled N. | |
| dc.date.accessioned | 2012-07-23T23:06:38Z | |
| dc.date.available | 2012-07-23T23:06:38Z | |
| dc.date.issued | 2012-01-26 | |
| dc.date.submitted | 2010-07-20 | |
| dc.identifier.uri | http://hdl.handle.net/10754/235312 | |
| dc.description.abstract | Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences. | |
| dc.language.iso | en | |
| dc.relation.url | http://www.google.com/patents/US20120023110 | |
| dc.relation.url | http://appft.uspto.gov/netacgi/nph-Parser?Sect1=PTO1&Sect2=HITOFF&d=PG01&p=1&u=%2Fnetahtml%2FPTO%2Fsrchnum.html&r=1&f=G&l=50&s1=%2220120023110%22.PGNR.&OS=DN/20120023110&RS=DN/20120023110 | |
| dc.title | Adaptive Processing for Sequence Alignment | |
| dc.type | Patent | |
| dc.contributor.department | Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division | |
| dc.contributor.department | Sensors Lab | |
| dc.description.status | Granted Patent | |
| dc.contributor.affiliation | King Abdullah University of Science and Technology (KAUST) | |
| dc.contributor.assignee | King Abdullah University of Science and Technology (KAUST) | |
| dc.description.country | United States | |
| dc.identifier.patentnumber | US9747413B2 | |
| dc.identifier.applicationnumber | US 20120023110 A1 | |
| refterms.dateFOA | 2018-06-14T06:12:26Z |
