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Adaptive Processing for Sequence Alignment

dc.contributor.authorZidan, Mohammed A.
dc.contributor.authorBonny, Talal
dc.contributor.authorSalama, Khaled N.
dc.date.accessioned2012-07-23T23:06:38Z
dc.date.available2012-07-23T23:06:38Z
dc.date.issued2012-01-26
dc.date.submitted2010-07-20
dc.identifier.urihttp://hdl.handle.net/10754/235312
dc.description.abstractDisclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.
dc.language.isoen
dc.relation.urlhttp://www.google.com/patents/US20120023110
dc.relation.urlhttp://appft.uspto.gov/netacgi/nph-Parser?Sect1=PTO1&Sect2=HITOFF&d=PG01&p=1&u=%2Fnetahtml%2FPTO%2Fsrchnum.html&r=1&f=G&l=50&s1=%2220120023110%22.PGNR.&OS=DN/20120023110&RS=DN/20120023110
dc.titleAdaptive Processing for Sequence Alignment
dc.typePatent
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
dc.contributor.departmentSensors Lab
dc.description.statusGranted Patent
dc.contributor.affiliationKing Abdullah University of Science and Technology (KAUST)
dc.contributor.assigneeKing Abdullah University of Science and Technology (KAUST)
dc.description.countryUnited States
dc.identifier.patentnumberUS9747413B2
dc.identifier.applicationnumberUS 20120023110 A1
refterms.dateFOA2018-06-14T06:12:26Z


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