>CPMV____Cowpea_mosaic_virus
----------KRRFVQGDDCVVSLIPGTTVAKAYEELEASAHRFVPALVGIECPK--DEK
LPMRKVFDKPKTRCFTILPME--YNLVVRRKFLNFV-RFIMANRHRLSCQVGINPYSMEW
SRLAARM------KEKGNDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGE-------
--------DQLKNARRNLLMACCSRLAICKNTVWR-------------VE--CGIPSGFP
MTVIVNSI-FNEILIRYHYK----------------------------------------
---------KLMREQQAPEL---------MVQSFDKLIGLVTYGDDNLISVNA------V
VTPYFDGKKLKQSL--AQ--------GGVTITDGKDKTSLELP----------------F
RRLEECDFLKRTFVQRSST---------IWDAPEDKASLWSQLHYVNCNNCEKEVAYLTN
VVNVLR
>Polio___Poliovirus
-----------------PYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDE
LRSKTKVEQGKSRLIEASSLN--DSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS
KIP----------VLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRV-------
--------DYID--------YLNHSHHLYKNKTYC-------------VK--GGMPSGCS
GTSIFNSM-INNLIIRTLLL----------------------------------------
---------------------------KTYKGIDLDHLKMIAYGDDVIA----------S
YPHEVDASLLAQSG--KD--------YGLTMTPADKSATFE------------------T
VTWENVTFLKRFFRADEKY---PFLIHPVMPMKEIHESIRWTKDPRNTQDHV--------
------
>HAV_____Human_hepatitis_A_virus
---------------------------PRLAQRILFNTVMMENCSDLDVVFTTCP--KDE
LRPLEKVLESKTRAIDACPLD--YSILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWD
ELFKTMIRFG---DVGLDLDFSA----FDASLSPFMIREAGRIMSEL--SGTP-------
--------SHFG---TALINTIIYSKHLLYNCCYH-------------VC--GSMPSGSP
CTALLNSI-INNVNLYYVFS----------------------------------------
---------KIFGKSPV---------------FFCQALKILCYGDDVLIVFSRDVQ---I
DNLDLIGQKIVDEF--KK--------LGMTATSADKNVPQ-------------------L
KPVSELTFLKRSFNLVEDRIRPAISEKTIWSLIAWQRSNAEFEQNLENAQWFAFMH----
------
>SmTCL1__S._microadriaticum_Ty1-Copia-like_1
---------------------------QEAVRKCMDAAEEDEAKESGRIMK--CRWVLTW
KPIPEEERDEALKEVATKGDTTIDSTATRKAKARIVLLGYQHPDLLREGFNSSAPVQSVL
TRNLAY-------QMTVQNGWTLESLDLSTAFLQTAPKEEMRIWT----QGVA-------
--------ELRS------------ALGVGDDQLLR-------------VL---KDFYGST
TAPRGLWL-DLHATFTKLGA----------------------------------------
--------TKILSDPCMWIWTEPNPNPRNAMDRFRTIGMMGGHVDDFNRSGDL------E
NPRWLEIRERIDKA--YK--------WGTINRGSYRHAGTDIISSHHPDDGLVIEVNQDQ
YIEAIADFP--MAAVSGRAPEDPLDDREVAKCRAALGSLQWVAVQTQ-------------
------
>SmTCL2__S._microadriaticum_Ty1-Copia-like_2
------------------------------MAKVLAPKEAAKFLAENPQSEIVPT-----
------------RWVETDKAQ---PWEPPRYKARIVVRG----DLEREGGTRTDSPTCSG
TMLNVLL------SYAASKRLRLHGGDITASFLQGEQMSRVLVLRLPKGGLPD-------
--------VEEG------------SLLIANKPVY-----------------------GTR
DAPRGFWR-RLHTVCVVQGL----------------------------------------
--------RPIPHEHAAYVL---------NKKDGNISGILVSHVDDLLWCGDKE-----M
DEVMAAIQAEFKFG--SLEHGDKFEYCGRTIQQGEEVDGIYVPEHGSQGT---------W
STSRRAVTLREGQGRHRGR---------DQPTSECGRVAELGHA----------------
------
>SmTCL3__S._microadriaticum_Ty1-Copia-like_3
------------------------------NETWDDSTACDPSELKAQARALGID--IKI
AE--------LLTLCGIKHAE--LDVSQRKYKGRIVYRG--DKVLTQDGDVVFFNEVSTT
PTTLTALNVVL--WWGAQAGHTTTTADAVQAFLQSSLPDAELTYVVL----PP-------
--------ELWL--------KRWTHRFRKVAVRLR-------------KS-----LYGHP
QAGRLWQD-YLLERIKRLNG----------------------------------------
------TEMPGFPSNFVFKF---------VLDDQTVILILNVYVDDLTLSGP-------K
RLHERFWKSFCEIINTEPPQELTAERAALVLGR--LHTVVE------------------G
LSFPSITMCMQGYAKQLVDLYIDITQVDVKCLRHVGTPHVSDSSLPD-------------
------
>R1Bm____B._mori
-------------------------------PVWKDGRLLVLPKGNGRPLT--DP--K--
----------AYRPVTLLPVL------GKILEKVLLQCAPGLTHSISPRQHGFSPGRSTV
TALRTLLDVS---RASEQRYVMAIFLDISGAFDNAWWPMIMVKAKR---NCPP-------
--------NIYR-MLTDYFRGRRIAVVAGECAEWK-------------VS-TMGCPQGSV
LGPTLWNV-LMDDLLALPQG----------------------------------------
----------------------------------IEGTEMVAYADDVTVLV--------R
GDSRAQLERRAHAV------------LGLAEG---------------------------W
ASRNKLDFA----PAKSRC---------IMLRGKFQRPPIVRYGSHV-------------
------
>R2Bm____B._mori
-------------------------------NAWMARGEIPEILRQCRTVF--VP--KVE
RPGGPG----EYRPISIASIP--LRHFHSILARRLLACC--PPDARQRGFICADGTLENS
AVLDAVLGD----SRKKLRECHVAVLDFAKAFDTVSHEALVELLRLR--GMPE-------
--------QFCG-YIAHLYDTASTTLAVNNEMSSP-------------VKVGRGVRQGDP
LSPILFNV-VMDLILASLPE----------------------------------------
---------------------------RVGYRLEMELVSALAYADDLVLLAGS------K
VGMQESISAVDCVG--RQ--------MGLRLNC--RKSAVLSMIPD-------------G
HRKKHHYLTERTFNIGGKP---------LRQVSCVER-----------------------
------
>CERV____Carnation_etched_ring_virus
---------------------------SYSPSDREEFDRQIKELLELKVIK--PS--K--
ST--------HMSPAFLVE----NEAERRRGKKRMVVNY----KAMNKATKGDAHNLPNK
DELLTLVRGK--------KIYSS--FDCKSGLWQVLLDKESQLLTAF--TCPQ-------
--------GHYQ---------------------WN-------------VV-----PFGLK
QAPSIFPKTYANSHSNQYSK----------------------------------------
--------------------------------------YCCVYVDDILVFSNTG-----R
KEHYIHVLNILRRC--EK--------LGIILSK--KKA---------------------Q
LFKEKINFL--GLEIDQGT---------HCPQNHILEHIHKFPD----------------
------
>CaMV____Cauliflower_mosaic_virus
---------------------------KYSPMDREEFDKQIKELLDLKVIK--PS--K--
SP--------HMAPAFLVN----NEAEKRRGKKRMVVNY----KAMNKATVGDAYNLPNK
DELLTLIRGK--------KIFSS--FDCKSGFWQVLLDQESRPLTAF--TCPQ-------
--------GHYE---------------------WN-------------VV-----PFGLK
QAPSIFQR-HMDEAFRVFRK----------------------------------------
--------------------------------------FCCVYVDDILVFSNN------E
EDHLLHVAMILQKC--NQ--------HGIILSK--KKA---------------------Q
LFKKKINFL--GLEIDEGT---------HKPQGHILEHINKFPD----------------
------
>Copia___D._melanogaster
--------------------------RDDKSSWEEAINTELNAHKINNTWT--IT--K--
RPENKNIV--DSRWVFSVKYN--ELGNPIRYKARLVARG-----FTQKYQIDYEETFAPV
ARISSFRFIL---SLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS-------
--------DN--------------------VCKLN-------------KA-----IYGLK
QAARCWFE-VFEQALKECEF----------------------------------------
--------VNSSVDRCIYIL---------DKGNINENIYVLLYVDDVVIATGD------M
TRMNNFKRYLMEKFRMTDLNEIKHF-IGIRIEMQEDKIYLSQSA---------------Y
VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRS-------------------
------
>R1Dm____D._melanogaster
---------------------------ASLFSRCIRLGYFPAEWKCPRVVS--LL--K--
GPDKDKCEPSSYRGICLLPVF--GKVLEAIMVNRVREVL----PEGCRWQFGFRQGRCVE
DAWRHVKSSV---GASAAQYVLGTFVDFKGAFDNVEWSAALSRLADL-GCREM-------
--------GLWQ-----SFFSGRRAVIRSSSGTVE-------------VPVTRGCPQGSI
SGPFIWDI-LMDVLLQRLQP----------------------------------------
------------------------------------YCQLSAYADDLLLLVEGNSRAVLE
EKGAQLMSIVETWG--AE--------VGDCLST--SKTVIMLLKGA-------------L
RRAPTVRFA--GRNLPYVR---------SCRYLGITVSEGMKFLTHIASLRQRMTGV---
------
>DHBV____Duck_hepatitis_B_virus
------------------------------ENAWYLRGNTSWPNRITGKLF---------
----------------LVDKN-----SRNTTEARLVVDF----SQFSKGKNAMRFPRYWS
PNLSTLRRIL---PVGMPRIS----LDLSQAFYHLPLNPASSSRLAVSDGQHV-------
--------YYFR------------------------------------KA-----PMGVG
LSPFLLHL-FTTALGSEIAR----------------------------------------
----------------------------------RFNVWTFTYMDDFLLCHPN------A
RHLNSISHAVCSFL--QE--------LGIRINF--DKTT--------------------P
SPVNDIRFL--GYQIDQ-------------------------------------------
------
>FMV_____Figwort_mosaic_virus
---------------------------SYSPQDREGFAKQIKELLDLGLII--PS--K--
SQ--------HMSPAFLVE----NEAERRRGKKRMVVNY----KAINQATIGDSHNLPNM
QELLTLLRGK--------SIFSS--FDCKSGFWQVVLDEESQKLTAF--TCPQ-------
--------GHFQ---------------------WK-------------VV-----PFGLK
QAPSIFQR-HMQTALNGADK----------------------------------------
--------------------------------------FCMVYVDDIIVFSNS------E
LDHYNHVYAVLKIV--EK--------YGIILSK--KKA---------------------N
LFKEKINFL--GLEIDKGT---------HCPQNHILENIHKFPD----------------
------
>Gypsy___D._melanogaster
---------------------------PTLMGVSDFVNNEVKQLLKDGIIR--PS--R--
SP--------YNSPTWVVDKK--GTDASGNPNKRLVIDF----RKLNEKTIPDRYPMPSI
PMILA--------NLGKAKFFTT--LDLKSGYHQIYLAEHDREKTSF--SVNG-------
--------GKYE---------------------FC-------------RL-----PFGLR
NASSIFQR-ALDDVLREQIG----------------------------------------
-------------------------------------KICYVYVDDVIIFSEN------E
SDHVRHIDTVLKCL--ID--------ANMRVSQ--EKT---------------------R
FFKESVEYL--GFIVSKDG---------TKSDPEKVKAIQEYPE----------------
------
>HBV_____Human_hepatitis_B_virus
-------------------------------------EHHIRIPRTPSRVT---------
------------GGVFLVDKN-----PHNTAESRLVVDF----SQFSRGNYRVSWPKFAV
PNLQSLTN-----LLSSNLSWLS--LDVSAAFYHLPLHPAAMPHLLV--GSSGLSRYVAR
LSSNSRILNNQHGTMPDLHDYCSRNLYVSLLLLYQTFGRKLHLYSHPIILGFRKIPMGVG
LSPFLLAQ-FTSAICSVVRR----------------------------------------
---------------------------------AFPHCLAFSYMDDVVLGAKS------V
QHLESLFTAVTNFL--LS--------LGIHLNP--NKT---------------------K
RWGYSLNFM--GYVIGCYG---------SLP-----------------------------
------
>HIV1____Human_immunodeficiency_virus_1
LNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGP--E--
NP--------YNTPVFAIKKK-------DSTKWRKLVDF----RELNKRTQDFWEVQLGI
PHPAGL-------KKK--KSVTV--LDVGDAYFSVPLHEDFRKYTAF--TIPS-------
--------INNE--------------TPGTRYQYN-------------VL-----PQGWK
GSPAIFQS-SMTTILEPFRK----------------------------------------
---------------------------------QNPDLVIYQYMDDLYVGSDLE-----I
GQHRTKIEELRQHL--LR--------WGFTTPD--KK----------------------H
QKEPPFLWM--GYELHPDK----------WTVQPIVLPEKDSWTV---------------
------
>HIV2____Human_immunodeficiency_virus_2
LNFPVAKVEPVKVELKPGKDGPKIRQWPLSREKILALKEICEKMEKEGQLEEAPP--T--
NP--------YNTPTFAIKKK-------DKNKWRMLIDF----RELNKVTQDFTEVNWVF
PTR----------QVAEKRRITV--IDVGDAYFSIPLDPNFRQYTAF--TLPS-------
--------VNNA--------------EPGKRYIYK-------------VL-----PQGWK
GSQSICQY-SMRKVLDPFRK----------------------------------------
---------------------------------ANSDVIIIQYMDDILIASDRS-----D
LEHDRVVSQLKELL--ND--------MGFSTPE--EK----------------------F
QKDPPFKWM--GYELWPKK----------WKLQKIQLPEKEVWTV---------------
------
>LINE1___Human
-------------------------FLLKLFQSIEKEGILPNSFYEASIIL--IP--K--
-PGRDTTKKENFRPISLMNID--AKILNKILANRIQQHI---KKLIHHDQVGFIPGMQGW
FNIRKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKL--GIDG-------
--------TYFK-IIRAIYDKPTANIILNGQKLEA-------------FPLKTGTRQGCP
LSPLLFNI-VLEVLARAIRQ----------------------------------------
------------------------EKEIKGIRLGKEEVKLSLFADDMIVYLENP-----I
VSAQNLLKLISNFS--KV--------SGYKINV--QKSQAFLYTNNRQTESQIMGELPFV
IASKRIKYL--GIQLTRDV---------KDLFKENYKPLLKEIK----------------
------
>matR____Lactococcus_lactis
---------------------------EKIKKIIQSLKDGTYYPQPVRRMY--IA--KKN
SK--------KMRPLGIPTFT--DKLIQEAVRIILESIY---EPVFEDVSHGFRPQRSCH
TALKTIKR-----EFGGARWFVE--GDIKGCFDNIDHVTLIGLINLK--IKDM-------
--------KMSQ-----LIYKFLKAGYL-ENWQYH-------------KT-YSGTPQGGI
LSPLLANI-YLHELDKFVLQ-LKMKFDRESP--ERITPEYRELHNEIKRISHRLKKLEGE
EKAKVLLEYQEKRKRLPTLP---------CTSQTNKVLKYVRYADDFIISVKGS-----K
EDCQWIKEQLKLFIH-NK--------LKMEFSE--EKTLI-------------------T
HSSQPARFL--GYDIRVRR---------SGTIKRSGKVKKRTLN----------------
------
>MuLV____Moloney_murine_leukemia
GMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILV--PC--Q--
SP--------WNTPLLPVKKP-------GTNDYRPVQDL----REVNKRVEDIHPTVPNP
YNLLSGLPPSH-------QWYTV--LDLKDAFFCLRLHPTSQPLFAF--EWRD-------
--------PEMG---------------ISGQLTWT-------------RL-----PQGFK
NSPTLFDE-ALHRDLADFRI----------------------------------------
---------------------------------QHPDLILLQYVDDLLLAATS------E
LDCQQGTRALLQTL--GD--------LGYRASA--KKA---------------------Q
ICQKQVKYL--GYLLKEGQ---------RWLTEARKETVMGQPT----------------
------
>RSV_____Rous_sarcoma
TVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLS-----
---------CWNTPVFVIRKA--------SGSYRLLHDL----RAVNAKLVPFGAVQQGA
PVLSALP-----------RGWPLMVLDLKDCFFSIPLAEQDREAFAF--TLPS-------
--------VNNQ--------------APARRFQWK-------------VL-----PQGMT
CSPTICQL-VVGQVLEPLRL----------------------------------------
---------------------------------KHPSLCMLHYMDDLLLAASS------H
DGLEAAGEEVISTL--ER--------AGFTISP--DK----------------------V
QREPGVQYL--GYKLGSTY---------VAPVGLVAEPRIATLW----------------
------
>al1_____S._cerevisiae
---------------------------MYLNKLSNELGTGKFKFKPMRMVN--IP-----
KPKG------GMRPLSVGNPR--DKIVQEVMRMILDTIF---DKKMSTHSHGFRKNMSCQ
TAIWEVRN-----MFGGSNWFIE--VDLKKCFDTISHDLIIKELKRY--ISDK-------
--------GFID-----LVYKLLRAGYIDEKGTYH-------------KP-MLGLPQGSL
ISPILCNI-VMTLVDNWLED-YINLYNKGKV--KKQHPTYKKLSRMIAKAKMFSTR----
------LKLHKERAKGPTFI---------YNDPNFKRMKYVRYADDILIGVLGS-----K
NDCKMIKRDLNNFL--NS--------LGLTMNE--EKTLIT------------------C
ATETPARFL--GYNISITP---------LKRMPTVTKTIRGKTI----------------
------
>al2_____S._cerevisiae
---------------------------SYLNKLSKDINTNMFKFSPVRRVE--IP--KTS
G---------GFRPLSVGNPR--EKIVQESMRMMLEIIY---NNSFSYYSHGFRPNLSCL
TAIIQCKN-----YMQYCNWFIK--VDLNKCFDTIPHNMLINVLNER--IKDK-------
--------GFMD-----LLYKLLRAGYVDKNNNYH-------------NT-TLGIPQGSV
VSPILCNI-FLDKLDKYLENKFENEFNTGNMSNRGRNPIYNSLSSKIYRCKLLSEK----
------LKLIRLRDHYQRNM---------GSDKSFKRAYFVRYADDIIIGVMGS-----H
NDCKNILNDINNFLK-EN--------LGMSINM--DKSVI-------------------K
HSKEGVSFL--GYDVKVTP----------WEKRPYRMIKKGDNFI---------------
------
>SMRV____Squirrel_monkey_retrovirus
-----IPVPHADKISWKITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIE--PT--N--
SP--------WNTPIFIIKKK--------SGSWRLLQDL----RAVNKVMVPMGALQPGL
PSPVAIPLNYH--KIV---------IDLKDCFFTIPLHPEDRPYFAF--SVPQ-------
--------INFQ--------------SPMPRYQWK-------------VL-----PQGMA
NSPTLCQK-FVAAAIAPVRS----------------------------------------
---------------------------------QWPEAYILHYMDDILLACDS------A
EAAKACYAHIISCL--TS--------YGLKIAP--DK----------------------V
QVSEPFSYL--GFELHHQQ---------VFTPRVCLKTDHLKTL----------------
------
>Tnt1-94_N._tabacum
--------------------------HPEKNQLMKAMQEEMESLQKNGTYK--LV--E--
LPKGKRPL--KCKWVFKLKKD--GDCKLVRYKARLVVKG-----FEQKKGIDFDEIFSPV
VKMTSIRTIL---SLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG-------
--------KKHM------------------VCKLN-------------KS-----LYGLK
QAPRQWYM-KFDSFMKSQTY----------------------------------------
--------LKTYSDPCVYF----------KRFSENNFIILLLYVDDMLIVGKD------K
GLIAKLKGDLSKSFDMKD--------LG--------------------------------
---PAQQIL--GMKIVRER----------TSRKLWLSQEKYIER----------------
------
>Ty1-17__S._cerevisiae
---------------------------LLKMNTWDTNKYYDRNDIDPKKVI---------
------------NSMFIFNKK-----RDGTHKARFVARG--DIQHPDTYDSDMQSNTVHH
YALMTSL------SIALDNDYYITQLDISSAYLYADIKEELY-------IRPP-------
--------PHLG--------------LNDKLLRLR-------------KS-----LYGLK
QSGANWYETIKSYLINCCDM----------------------------------------
--------------QEVRGW---------SCVFKNSQVTICLFVDDMILFSKD------L
NANKKIITTLKKQY--DT--------KIINLGESDNEIQYDILGL--------------E
IKYQRSKYMKLGMEKSLTE---------KLPKLNVPLNPKGKKLR---------------
------
>Ty3-2___S._cerevisiae
---------------------------HVTEKNEQEINKIVQKLLDNKFIV--PS--K--
SP--------CSSPVVLVPKK--------DGTFRLCVDY----RTLNKATISDPFPLPRI
DNLLS--------RIGNAQIFTT--LDLHSGYHQIPMEPKDRYKTAF--VTPS-------
--------GKYE---------------------YT-------------VM-----PFGLV
NAPSTFAR-YMADTFRDLRF----------------------------------------
---------------------------------------VNVYLDDILIFSES------P
EEHWKHLDTVLERL--KN--------ENLIVKK--KKC---------------------K
FASEETEFL--GYSIGIQK---------IAPLQHKCAAIRDFPT----------------
------
>WHV_____Woodchuck_hepatitis_virus
----------------------------DWGPCTVTGDVTIKSPRTPRRIT---------
------------GGVFLVDKN-----PNNSSESRLVVDF----SQFSRGHTRVHWPKFAV
PNLQTLAN-----LLSTNLQWLS--LDVSAAFYHIPISPAAVPHLLV--GSPGLERFNTC
LSSSTHNRNNSQ--LQTMHNLCTRHVYSSLLLLFKTYGRKLHLLAHPFIMGFRKLPMGVG
LSPFLLAQ-FTSALASMVRR----------------------------------------
---------------------------------NFPHCVVFAYMDDLVLGART------S
EHLTAIYSHICSVF--LD--------LGIHLNV--NKT---------------------K
WWGNHLHFM--GYVITSSG---------VLPQDKHVK-----------------------
------
>Tx1_____X._laevis
---------------------------DFHRVLTEAFKKGELPLSCRRAVLSLLP-----
-KKGDLRLIKNWRPVSLLSTD--YKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNV
FLIRDLLHFAR--RTGLSLAFLS--LDQEKAFDRVDHQYLIGTLQAY--SFGP-------
--------QFVG-----YLKTMYASAECLVKINWSLTAP---------LAFGRGVRQGCP
LSGQLYSL-AIEPFLCLLRK----------------------------------------
------------------------RLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERA
QECQEVYAAASSAR--IN--------WSKSSGLLEGSLKVDFLPPAFRDI---------S
WESKIIKYL--GVYLSAEE----------YPVSQNFIELEECVLT---------------
------
>Cin4____Z._mays
-------------------------LSKAINDFYHHKCKSLHLVNEANIVL--LP--KRE
NPDRID----LFRPISLINSC--MKIITKIMATRLAPRMNEIVSTTQNAFIQKRSIHDNF
LYVQKVIKKLH--KSKQAALFVK--LDISKAFDSLNWAYLLDVLKAL--GFTQ-------
--------KWRD-WIATILGSSSSKIIINGQQTKE-------------IKHMRGVRQGDP
LSPFLFIL-AMDPLQRMIER----------------------------------------
------------AAHEGLLG---------QVLPNGAKFRCSLYADDAGVFVRAD-----K
LDLKVLKRILEAFE--WC--------SGLKINF--EKTEIFPIRYPESLWSNLMEVFPGK
YSNFPGKYL--GLPLHFRN---------IKRIEFQPLIEKINKR----------------
------
>SmTCL4__S._microadriaticum_Ty1-Copia-like_4
---------------------EKYLSADEKEMFRSAKKAEWGQWVSNEVVDLISR--RGI
DPKRVI----SSRWVLTWKRIDETPDAPVKAKARLVLKG---FKDPDLGQFSTASPTLSR
QGRHAIL------SVAAQQQWRVFTLDAKTAFLAGDRSSRTKPIYA---ELPR-------
--------DLVR------------ELGLGEETIAR-------------IK---KVPYGLS
EAPLAWYR-RLTAELVGCGF----------------------------------------
--------EQVASDRCIYVL-------RHRSKPGVIVGIVGAHVDDLIIAGCSLGENRQF
EEALAELTRRLPFGDRKYADVSPVLYTGINVRQHPQTRDISIDQNHYIA----------K
LKEVPTRKIPEGLLDQAGQGLFWSQLGAILWVAVNTRPDVGYDVSHYASFGT--------
------