Hologenome analysis of two marine sponges with different microbiomes

Handle URI:
http://hdl.handle.net/10754/600476
Title:
Hologenome analysis of two marine sponges with different microbiomes
Authors:
Ryu, Tae Woo; Seridi, Loqmane ( 0000-0001-7028-3024 ) ; Moitinho-Silva, Lucas; Oates, Matthew; Liew, Yi Jin ( 0000-0003-2553-8870 ) ; Mavromatis, Charalampos Harris ( 0000-0002-7327-231X ) ; Wang, Xiaolei; Haywood, Annika; Lafi, Feras Fawzi; Kupresanin, Marija; Sougrat, Rachid; Alzahrani, Majed A.; Giles, Emily; Ghosheh, Yanal ( 0000-0002-3733-2098 ) ; Schunter, Celia Marei ( 0000-0003-3620-2731 ) ; Baumgarten, Sebastian ( 0000-0003-2646-7699 ) ; Berumen, Michael L. ( 0000-0003-2463-2742 ) ; Gao, Xin ( 0000-0002-7108-3574 ) ; Aranda, Manuel ( 0000-0001-6673-016X ) ; Foret, Sylvain; Gough, Julian; Voolstra, Christian R. ( 0000-0003-4555-3795 ) ; Hentschel, Ute; Ravasi, Timothy ( 0000-0002-9950-465X )
Abstract:
Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.
KAUST Department:
KAUST Environmental Epigenetic Program (KEEP); Biological and Environmental Sciences and Engineering (BESE) Division; Red Sea Research Center (RSRC); Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division; Computational Bioscience Research Center (CBRC); Center for Desert Agriculture; Imaging and Characterization Core Lab
Citation:
Hologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC Genomics
Publisher:
Springer Science + Business Media
Journal:
BMC Genomics
Issue Date:
29-Feb-2016
DOI:
10.1186/s12864-016-2501-0
Type:
Article
ISSN:
1471-2164
Sponsors:
This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.
Is Supplemented By:
Taewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026; DOI:10.6084/m9.figshare.c.3597026; HANDLE:http://hdl.handle.net/10754/624127
Additional Links:
http://www.biomedcentral.com/1471-2164/17/158
Appears in Collections:
Articles; Red Sea Research Center (RSRC); Advanced Nanofabrication, Imaging and Characterization Core Lab; Center for Desert Agriculture; Computational Bioscience Research Center (CBRC); Biological and Environmental Sciences and Engineering (BESE) Division; Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division

Full metadata record

DC FieldValue Language
dc.contributor.authorRyu, Tae Wooen
dc.contributor.authorSeridi, Loqmaneen
dc.contributor.authorMoitinho-Silva, Lucasen
dc.contributor.authorOates, Matthewen
dc.contributor.authorLiew, Yi Jinen
dc.contributor.authorMavromatis, Charalampos Harrisen
dc.contributor.authorWang, Xiaoleien
dc.contributor.authorHaywood, Annikaen
dc.contributor.authorLafi, Feras Fawzien
dc.contributor.authorKupresanin, Marijaen
dc.contributor.authorSougrat, Rachiden
dc.contributor.authorAlzahrani, Majed A.en
dc.contributor.authorGiles, Emilyen
dc.contributor.authorGhosheh, Yanalen
dc.contributor.authorSchunter, Celia Mareien
dc.contributor.authorBaumgarten, Sebastianen
dc.contributor.authorBerumen, Michael L.en
dc.contributor.authorGao, Xinen
dc.contributor.authorAranda, Manuelen
dc.contributor.authorForet, Sylvainen
dc.contributor.authorGough, Julianen
dc.contributor.authorVoolstra, Christian R.en
dc.contributor.authorHentschel, Uteen
dc.contributor.authorRavasi, Timothyen
dc.date.accessioned2016-03-02T08:54:16Zen
dc.date.available2016-03-02T08:54:16Zen
dc.date.issued2016-02-29en
dc.identifier.citationHologenome analysis of two marine sponges with different microbiomes 2016, 17 (1) BMC Genomicsen
dc.identifier.issn1471-2164en
dc.identifier.doi10.1186/s12864-016-2501-0en
dc.identifier.urihttp://hdl.handle.net/10754/600476en
dc.description.abstractBackground Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.en
dc.description.sponsorshipThis work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.en
dc.language.isoenen
dc.publisherSpringer Science + Business Mediaen
dc.relation.urlhttp://www.biomedcentral.com/1471-2164/17/158en
dc.rightsThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://​creativecommons.​org/​licenses/​by/​4.​0/​), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://​creativecommons.​org/​publicdomain/​zero/​1.​0/​) applies to the data made available in this article, unless otherwise stated.en
dc.subjectSpongeen
dc.subjectStylissa carterien
dc.subjectXestospongia testudinariaen
dc.subjectInnate immune systemen
dc.subjectHosten
dc.subjectMicrobial symbiontsen
dc.subjectHologenomeen
dc.titleHologenome analysis of two marine sponges with different microbiomesen
dc.typeArticleen
dc.contributor.departmentKAUST Environmental Epigenetic Program (KEEP)en
dc.contributor.departmentBiological and Environmental Sciences and Engineering (BESE) Divisionen
dc.contributor.departmentRed Sea Research Center (RSRC)en
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Divisionen
dc.contributor.departmentComputational Bioscience Research Center (CBRC)en
dc.contributor.departmentCenter for Desert Agricultureen
dc.contributor.departmentImaging and Characterization Core Laben
dc.identifier.journalBMC Genomicsen
dc.eprint.versionPublisher's Version/PDFen
dc.contributor.institutionSchool of Biotechnology and Biomolecular Sciences & Centre for Marine Bio-Innovation, University of New South Wales Sydney, Sydney, Australiaen
dc.contributor.institutionDepartment of Computer Science, University of Bristol, 24 Tyndall Ave, Bristol, UKen
dc.contributor.institutionDivision of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra ACT 2601, Australiaen
dc.contributor.institutionGEOMAR Helmholtz Centre for Ocean Research, RD3 Marine Microbiology and Christian-Albrechts University of Kiel, Düsternbrooker Weg 20, D-24105 Kiel, Germanyen
dc.contributor.institutionAPEC Climate Center, Busan 48058, South Koreaen
dc.contributor.affiliationKing Abdullah University of Science and Technology (KAUST)en
kaust.authorRyu, Tae Wooen
kaust.authorSeridi, Loqmaneen
kaust.authorLiew, Yi Jinen
kaust.authorMavromatis, Charalampos Harrisen
kaust.authorWang, Xiaoleien
kaust.authorHaywood, Annikaen
kaust.authorLafi, Feras Fawzien
kaust.authorSougrat, Rachiden
kaust.authorAlzahrani, Majed A.en
kaust.authorGiles, Emilyen
kaust.authorGhosheh, Yanalen
kaust.authorSchunter, Celia Mareien
kaust.authorBaumgarten, Sebastianen
kaust.authorBerumen, Michael L.en
kaust.authorGao, Xinen
kaust.authorAranda, Manuelen
kaust.authorVoolstra, Christian R.en
kaust.authorRavasi, Timothyen
dc.relation.isSupplementedByTaewoo Ryu, Loqmane Seridi, Moitinho-Silva, L., Oates, M., Liew, Y., Mavromatis, C., … Ravasi. (2016). Hologenome analysis of two marine sponges with different microbiomes. Figshare. https://doi.org/10.6084/m9.figshare.c.3597026en
dc.relation.isSupplementedByDOI:10.6084/m9.figshare.c.3597026en
dc.relation.isSupplementedByHANDLE:http://hdl.handle.net/10754/624127en
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