A Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Series

Handle URI:
http://hdl.handle.net/10754/597416
Title:
A Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Series
Authors:
Martinez, Josue G.; Bohn, Kirsten M.; Carroll, Raymond J.; Morris, Jeffrey S.
Abstract:
We describe a new approach to analyze chirp syllables of free-tailed bats from two regions of Texas in which they are predominant: Austin and College Station. Our goal is to characterize any systematic regional differences in the mating chirps and assess whether individual bats have signature chirps. The data are analyzed by modeling spectrograms of the chirps as responses in a Bayesian functional mixed model. Given the variable chirp lengths, we compute the spectrograms on a relative time scale interpretable as the relative chirp position, using a variable window overlap based on chirp length. We use 2D wavelet transforms to capture correlation within the spectrogram in our modeling and obtain adaptive regularization of the estimates and inference for the regions-specific spectrograms. Our model includes random effect spectrograms at the bat level to account for correlation among chirps from the same bat, and to assess relative variability in chirp spectrograms within and between bats. The modeling of spectrograms using functional mixed models is a general approach for the analysis of replicated nonstationary time series, such as our acoustical signals, to relate aspects of the signals to various predictors, while accounting for between-signal structure. This can be done on raw spectrograms when all signals are of the same length, and can be done using spectrograms defined on a relative time scale for signals of variable length in settings where the idea of defining correspondence across signals based on relative position is sensible.
Citation:
Martinez JG, Bohn KM, Carroll RJ, Morris JS (2013) A Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Series. Journal of the American Statistical Association 108: 514–526. Available: http://dx.doi.org/10.1080/01621459.2013.793118.
Publisher:
Informa UK Limited
Journal:
Journal of the American Statistical Association
KAUST Grant Number:
KUS-CI-016-04
Issue Date:
Jun-2013
DOI:
10.1080/01621459.2013.793118
PubMed ID:
23997376
PubMed Central ID:
PMC3755785
Type:
Article
ISSN:
0162-1459; 1537-274X
Sponsors:
Josue G. Martinez (Deceased) was recently at the Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, PO Box 301402, Houston, TX 77230-1402. Kirsten M. Bohn is Assistant Professor, School of Integrated Science, Florida International University, Miami, FL 33199 (E-mall: kbohn@fiu.edu). Raymond J. Carroll is Distinguished Professor, Department of Statistics, Texas A&M University, 3143 TAMU, College Station, TX 77843-3143 (E-mail: carroll@stat.tamu.edu). Jeffrey S. Morris is Professor, The University of Texas MD Anderson Cancer Center, Unit 1411, PO Box 301402, Houston, TX 77230-1402 (E-mail: jefmorris@mdanderson.org). Martinez was supported by a post-doctoral training grant from the National Cancer Institute (R25T-CA90301). Morris was supported by a grant from the National Cancer Institute (R01-CA107304). Carroll's research was supported by a grant from the National Cancer Institute (R37-CA05730) and by Award Number KUS-CI-016-04, made by King Abdullah University of Science and Technology (KAUST). We thank Richard C. Herrick for implementing the functional mixed model into the WFMM software used to obtain the results presented in this work. Additionally, this work was supported by the Statistical and Applied Mathematical Sciences Institute (SAMSI) Program on the Analysis of Object Data. We also thank the editor, associate editor, and reviewers for their insightful comments that helped improve this article.
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Full metadata record

DC FieldValue Language
dc.contributor.authorMartinez, Josue G.en
dc.contributor.authorBohn, Kirsten M.en
dc.contributor.authorCarroll, Raymond J.en
dc.contributor.authorMorris, Jeffrey S.en
dc.date.accessioned2016-02-25T12:32:47Zen
dc.date.available2016-02-25T12:32:47Zen
dc.date.issued2013-06en
dc.identifier.citationMartinez JG, Bohn KM, Carroll RJ, Morris JS (2013) A Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Series. Journal of the American Statistical Association 108: 514–526. Available: http://dx.doi.org/10.1080/01621459.2013.793118.en
dc.identifier.issn0162-1459en
dc.identifier.issn1537-274Xen
dc.identifier.pmid23997376en
dc.identifier.doi10.1080/01621459.2013.793118en
dc.identifier.urihttp://hdl.handle.net/10754/597416en
dc.description.abstractWe describe a new approach to analyze chirp syllables of free-tailed bats from two regions of Texas in which they are predominant: Austin and College Station. Our goal is to characterize any systematic regional differences in the mating chirps and assess whether individual bats have signature chirps. The data are analyzed by modeling spectrograms of the chirps as responses in a Bayesian functional mixed model. Given the variable chirp lengths, we compute the spectrograms on a relative time scale interpretable as the relative chirp position, using a variable window overlap based on chirp length. We use 2D wavelet transforms to capture correlation within the spectrogram in our modeling and obtain adaptive regularization of the estimates and inference for the regions-specific spectrograms. Our model includes random effect spectrograms at the bat level to account for correlation among chirps from the same bat, and to assess relative variability in chirp spectrograms within and between bats. The modeling of spectrograms using functional mixed models is a general approach for the analysis of replicated nonstationary time series, such as our acoustical signals, to relate aspects of the signals to various predictors, while accounting for between-signal structure. This can be done on raw spectrograms when all signals are of the same length, and can be done using spectrograms defined on a relative time scale for signals of variable length in settings where the idea of defining correspondence across signals based on relative position is sensible.en
dc.description.sponsorshipJosue G. Martinez (Deceased) was recently at the Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, PO Box 301402, Houston, TX 77230-1402. Kirsten M. Bohn is Assistant Professor, School of Integrated Science, Florida International University, Miami, FL 33199 (E-mall: kbohn@fiu.edu). Raymond J. Carroll is Distinguished Professor, Department of Statistics, Texas A&M University, 3143 TAMU, College Station, TX 77843-3143 (E-mail: carroll@stat.tamu.edu). Jeffrey S. Morris is Professor, The University of Texas MD Anderson Cancer Center, Unit 1411, PO Box 301402, Houston, TX 77230-1402 (E-mail: jefmorris@mdanderson.org). Martinez was supported by a post-doctoral training grant from the National Cancer Institute (R25T-CA90301). Morris was supported by a grant from the National Cancer Institute (R01-CA107304). Carroll's research was supported by a grant from the National Cancer Institute (R37-CA05730) and by Award Number KUS-CI-016-04, made by King Abdullah University of Science and Technology (KAUST). We thank Richard C. Herrick for implementing the functional mixed model into the WFMM software used to obtain the results presented in this work. Additionally, this work was supported by the Statistical and Applied Mathematical Sciences Institute (SAMSI) Program on the Analysis of Object Data. We also thank the editor, associate editor, and reviewers for their insightful comments that helped improve this article.en
dc.publisherInforma UK Limiteden
dc.subjectSoftwareen
dc.subjectBayesian analysisen
dc.subjectFunctional Data Analysisen
dc.subjectSpectrogramen
dc.subjectChirpen
dc.subjectBat Syllableen
dc.subjectFunctional Mixed Modelen
dc.subjectIsomorphic Transformationen
dc.subjectNonstationary Time Seriesen
dc.subjectVariable Overlapen
dc.titleA Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Seriesen
dc.typeArticleen
dc.identifier.journalJournal of the American Statistical Associationen
dc.identifier.pmcidPMC3755785en
dc.contributor.institution(Deceased) was recently at the Department of Radiation Oncology, The University of Texas M D Anderson Cancer Center, PO Box 301402, Houston, TX 77230-1402, USA.en
kaust.grant.numberKUS-CI-016-04en

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