Generation and Analysis of Full-length cDNA Sequences from Elephant Shark (Callorhinchus milii)

Handle URI:
http://hdl.handle.net/10754/581115
Title:
Generation and Analysis of Full-length cDNA Sequences from Elephant Shark (Callorhinchus milii)
Authors:
Kodzius, Rimantas ( 0000-0001-9417-8894 ) ; Tay, Boon-Hui; Tan, Yue Ying; Brenner, Sydney; Venkatesh, Byrappa
Abstract:
Cartilaginous fishes are the oldest living group of jawed vertebrates and therefore is an important group for understanding the evolution of vertebrate genomes including the human genome. Our laboratory has proposed elephant shark (C. milii) as a model cartilaginous fish genome because of its relatively small genome size (910 Mb). The whole genome of C. milii is being sequenced (first cartilaginous fish genome to be sequenced completely). To characterize the transcriptome of C. milii and to assist in annotating exon-intron boundaries, transcriptional start sites and alternatively spliced transcripts, we are generating full-length cDNA sequences from C. milii.
KAUST Department:
Computational Bioscience Research Center (CBRC); Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Conference/Event name:
Institute of Molecular and Cell Biology (IMCB) conference
Issue Date:
17-Mar-2009
Type:
Poster
Appears in Collections:
Posters; Computational Bioscience Research Center (CBRC); Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division

Full metadata record

DC FieldValue Language
dc.contributor.authorKodzius, Rimantasen
dc.contributor.authorTay, Boon-Huien
dc.contributor.authorTan, Yue Yingen
dc.contributor.authorBrenner, Sydneyen
dc.contributor.authorVenkatesh, Byrappaen
dc.date.accessioned2015-10-26T13:24:32Zen
dc.date.available2015-10-26T13:24:32Zen
dc.date.issued2009-03-17en
dc.identifier.urihttp://hdl.handle.net/10754/581115en
dc.description.abstractCartilaginous fishes are the oldest living group of jawed vertebrates and therefore is an important group for understanding the evolution of vertebrate genomes including the human genome. Our laboratory has proposed elephant shark (C. milii) as a model cartilaginous fish genome because of its relatively small genome size (910 Mb). The whole genome of C. milii is being sequenced (first cartilaginous fish genome to be sequenced completely). To characterize the transcriptome of C. milii and to assist in annotating exon-intron boundaries, transcriptional start sites and alternatively spliced transcripts, we are generating full-length cDNA sequences from C. milii.en
dc.subjectcartilaginous fishen
dc.subjectTranscriptomeen
dc.subjectTranscriptional start sitesen
dc.subjectcDNA libraryen
dc.titleGeneration and Analysis of Full-length cDNA Sequences from Elephant Shark (Callorhinchus milii)en
dc.typePosteren
dc.contributor.departmentComputational Bioscience Research Center (CBRC)en
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Divisionen
dc.conference.date2009.03.17en
dc.conference.nameInstitute of Molecular and Cell Biology (IMCB) conferenceen
dc.conference.locationSingaporeen
dc.contributor.institutionInstitute of Molecular and Cell Biology (IMCB)en
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