Nsite, NsiteH and NsiteM Computer Tools for Studying Tran-scription Regulatory Elements

Handle URI:
http://hdl.handle.net/10754/559100
Title:
Nsite, NsiteH and NsiteM Computer Tools for Studying Tran-scription Regulatory Elements
Authors:
Shahmuradov, Ilham A.; Solovyev, Victor ( 0000-0001-8885-493X )
Abstract:
Summary: Gene transcription is mostly conducted through interactions of various transcription factors and their binding sites on DNA (regulatory elements, REs). Today, we are still far from understanding the real regulatory content of promoter regions. Computer methods for identification of REs remain a widely used tool for studying and understanding transcriptional regulation mechanisms. The Nsite, NsiteH and NsiteM programs perform searches for statistically significant (non-random) motifs of known human, animal and plant one-box and composite REs in a single genomic sequence, in a pair of aligned homologous sequences and in a set of functionally related sequences, respectively.
KAUST Department:
Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division
Citation:
Nsite, NsiteH and NsiteM Computer Tools for Studying Tran-scription Regulatory Elements 2015:btv404 Bioinformatics
Publisher:
Oxford University Press (OUP)
Journal:
Bioinformatics
Issue Date:
2-Jul-2015
DOI:
10.1093/bioinformatics/btv404
Type:
Article
ISSN:
1367-4803; 1460-2059
Additional Links:
http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv404
Appears in Collections:
Articles; Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division

Full metadata record

DC FieldValue Language
dc.contributor.authorShahmuradov, Ilham A.en
dc.contributor.authorSolovyev, Victoren
dc.date.accessioned2015-07-07T07:31:29Zen
dc.date.available2015-07-07T07:31:29Zen
dc.date.issued2015-07-02en
dc.identifier.citationNsite, NsiteH and NsiteM Computer Tools for Studying Tran-scription Regulatory Elements 2015:btv404 Bioinformaticsen
dc.identifier.issn1367-4803en
dc.identifier.issn1460-2059en
dc.identifier.doi10.1093/bioinformatics/btv404en
dc.identifier.urihttp://hdl.handle.net/10754/559100en
dc.description.abstractSummary: Gene transcription is mostly conducted through interactions of various transcription factors and their binding sites on DNA (regulatory elements, REs). Today, we are still far from understanding the real regulatory content of promoter regions. Computer methods for identification of REs remain a widely used tool for studying and understanding transcriptional regulation mechanisms. The Nsite, NsiteH and NsiteM programs perform searches for statistically significant (non-random) motifs of known human, animal and plant one-box and composite REs in a single genomic sequence, in a pair of aligned homologous sequences and in a set of functionally related sequences, respectively.en
dc.publisherOxford University Press (OUP)en
dc.relation.urlhttp://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv404en
dc.rightsThis is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.en
dc.titleNsite, NsiteH and NsiteM Computer Tools for Studying Tran-scription Regulatory Elementsen
dc.typeArticleen
dc.contributor.departmentComputer, Electrical and Mathematical Sciences and Engineering (CEMSE) Divisionen
dc.identifier.journalBioinformaticsen
dc.eprint.versionPublisher's Version/PDFen
dc.contributor.institutionBioinformatics laboratory, Institute of Botany, ANAS, AZ1073 Baku, Azerbaijanen
dc.contributor.institutionSoftberry Inc., Mount Kisco, USAen
kaust.authorShahmuradov, Ilham A.en
kaust.authorSolovyev, Victor V.en
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