INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.

Handle URI:
http://hdl.handle.net/10754/323508
Title:
INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.
Authors:
Alam, Intikhab; Antunes, André; Kamau, Allan; Ba Alawi, Wail ( 0000-0002-2747-4703 ) ; Kalkatawi, Manal M. ( 0000-0002-9820-4129 ) ; Stingl, Ulrich ( 0000-0002-0684-2597 ) ; Bajic, Vladimir B. ( 0000-0001-5435-4750 )
Abstract:
The next generation sequencing technologies substantially increased the throughput of microbial genome sequencing. To functionally annotate newly sequenced microbial genomes, a variety of experimental and computational methods are used. Integration of information from different sources is a powerful approach to enhance such annotation. Functional analysis of microbial genomes, necessary for downstream experiments, crucially depends on this annotation but it is hampered by the current lack of suitable information integration and exploration systems for microbial genomes.
KAUST Department:
Red Sea Research Center (RSRC)
Citation:
Alam I, Antunes A, Kamau AA, Ba alawi Wail, Kalkatawi M, et al. (2013) INDIGO - INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles. PLoS ONE 8: e82210. doi:10.1371/journal.pone.0082210.
Publisher:
Public Library of Science (PLoS)
Journal:
PLoS ONE
Issue Date:
6-Dec-2013
DOI:
10.1371/journal.pone.0082210
PubMed ID:
24324765
PubMed Central ID:
PMC3855842
Type:
Article
ISSN:
1932-6203
Additional Links:
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0082210#pone-0082210-g004; http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855842/
Appears in Collections:
Articles; Red Sea Research Center (RSRC)

Full metadata record

DC FieldValue Language
dc.contributor.authorAlam, Intikhaben
dc.contributor.authorAntunes, Andréen
dc.contributor.authorKamau, Allanen
dc.contributor.authorBa Alawi, Wailen
dc.contributor.authorKalkatawi, Manal M.en
dc.contributor.authorStingl, Ulrichen
dc.contributor.authorBajic, Vladimir B.en
dc.date.accessioned2014-07-21T10:41:44Z-
dc.date.available2014-07-21T10:41:44Z-
dc.date.issued2013-12-06en
dc.identifier.citationAlam I, Antunes A, Kamau AA, Ba alawi Wail, Kalkatawi M, et al. (2013) INDIGO - INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles. PLoS ONE 8: e82210. doi:10.1371/journal.pone.0082210.en
dc.identifier.issn1932-6203en
dc.identifier.pmid24324765en
dc.identifier.doi10.1371/journal.pone.0082210en
dc.identifier.urihttp://hdl.handle.net/10754/323508en
dc.description.abstractThe next generation sequencing technologies substantially increased the throughput of microbial genome sequencing. To functionally annotate newly sequenced microbial genomes, a variety of experimental and computational methods are used. Integration of information from different sources is a powerful approach to enhance such annotation. Functional analysis of microbial genomes, necessary for downstream experiments, crucially depends on this annotation but it is hampered by the current lack of suitable information integration and exploration systems for microbial genomes.en
dc.language.isoenen
dc.publisherPublic Library of Science (PLoS)en
dc.relation.urlhttp://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0082210#pone-0082210-g004en
dc.relation.urlhttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855842/en
dc.rightsArchived with thanks to PloS oneen
dc.titleINDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.en
dc.typeArticleen
dc.contributor.departmentRed Sea Research Center (RSRC)en
dc.identifier.journalPLoS ONEen
dc.identifier.pmcidPMC3855842en
dc.eprint.versionPublisher's Version/PDFen
dc.contributor.institutionIBB-Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, Braga, Portugalen
dc.contributor.affiliationKing Abdullah University of Science and Technology (KAUST)en
kaust.authorAlam, Intikhaben
kaust.authorKalkatawi, Manal M.en
kaust.authorStingl, Ulrichen
kaust.authorBajic, Vladimir B.en
kaust.authorKamau, Allanen
kaust.authorBa Alawi, Wailen

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